Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g907 ATGGGGGATGGTGAGGAAAGCACACCTCCCAAGTCTTCTAAACCACCTGCTTCAACACAGGAGACACCATCAACCCCTTCTTATCCTGACTGGTCAACATCTATGCAGGCCTACTATGGTGCTGGAGCTACTCCGCCTCCTTTTTTCCCTTCTCCTGTTGCACCCCCATCCCCTCATCCGTACCTATGGGGAGGTCAGCATCCTATGATGCCACCATATGGAACTCCACTTCCATACCCAGCTCTCTATCCTCGTGGGGCCCTCTATGCTCATCCTAGCATGGCTACGGCTCAGGGTGTGGCACTGACAAATACCGACATGGAAGTAAAGACCCCTGATGGAAAAGACCCAGCATCAATTAAAAAATCAAAGGCAGCTTCAGGAAACATGGGTTTGATTAGTGGAAAATCTGGGGAAAGCGGAAAGGCAGCTTCAGTTTCTGGCAATGATGGTGCTTCACAAAGTGGGGAGAGTGGTAGTGAGGCCTCATCAGATGCGACTGATGAGAATGCTAACCAAGCATCTTCTGCAGTAAAGAAGAGAAGCTTCAACCTTGCTGATGGATCAAATGCAAAGGGTAACAGTGCTGCTCAGTACACTGGTGGAAATCATTCAGCCTCAGTTCCAGGCAAGCCTGTGGTACCTATGCCTACAACCAGTTTAAATATTGGGATGGACCTGTGGAATGCATCCCCTGCTGGAGGCACACCCATGAAGACAAGACCACAGTCATCTGGTGCCTCACCTCAAGTGGCTTCAGCAACTATAGTTGGACGTGAAGGCATGTTACAGGATCATCAATGGATTCAAGATGAACGTGAACTCAAACGACAAAGGAGAAAGCAATCCAATAGGGAGTCAGCTAGGAGATCAAGATTGCGTAAGCAGGCTGAATGTGAAGAATTACAATCAAAGGTTGAAATTTTGAGCAATGAGAATCATGTGCTGAGAGAGGAGCTGCATAGGCTTGCTGAGCAGTGCGAGAAGCTTACATCTGAGAATAATTCCATAATGGAGGAGTTGACACAATTGTATGGGCCAGAGGCAACATCTAGCCTTCAAGATAACAACCACAACTTGGTTCTCCATCCTATCAATGGTGAAGACGATGGCCATGTACAAGATGCTTCCCCTCTAAACAACTCCAGTTCCACGTCTGATCAAAATGGGAAATTCAGCTCCAATGGGAAGATTTGA 1197 47.54 MGDGEESTPPKSSKPPASTQETPSTPSYPDWSTSMQAYYGAGATPPPFFPSPVAPPSPHPYLWGGQHPMMPPYGTPLPYPALYPRGALYAHPSMATAQGVALTNTDMEVKTPDGKDPASIKKSKAASGNMGLISGKSGESGKAASVSGNDGASQSGESGSEASSDATDENANQASSAVKKRSFNLADGSNAKGNSAAQYTGGNHSASVPGKPVVPMPTTSLNIGMDLWNASPAGGTPMKTRPQSSGASPQVASATIVGREGMLQDHQWIQDERELKRQRRKQSNRESARRSRLRKQAECEELQSKVEILSNENHVLREELHRLAEQCEKLTSENNSIMEELTQLYGPEATSSLQDNNHNLVLHPINGEDDGHVQDASPLNNSSSTSDQNGKFSSNGKI* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10309575 10313870 + Vvi18g907 Vvi18g907 780610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g907 398 MobiDBLite consensus disorder prediction 362 398 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 140 205 - -
Vvi18g907 398 CDD bZIP_plant_GBF1 277 327 IPR045314 GO:0003700|GO:0006355
Vvi18g907 398 SUPERFAMILY Leucine zipper domain 275 331 IPR046347 GO:0003700|GO:0006355
Vvi18g907 398 SMART brlzneu 272 336 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 Pfam bZIP transcription factor 272 334 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 Pfam Disordered region downstream of MFMR 119 233 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 45 62 - -
Vvi18g907 398 PANTHER G-BOX-BINDING FACTOR 1 1 363 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 11 39 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 1 77 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 375 398 - -
Vvi18g907 398 Gene3D - 275 331 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 273 295 - -
Vvi18g907 398 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Vvi18g907 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 274 337 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 279 294 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 MobiDBLite consensus disorder prediction 236 252 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 107 252 - -
Vvi18g907 398 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 363 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi18g907 398 Coils Coil 285 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g907 K09060 GBF; plant G-box-binding factor - vvi:100250676 758.059
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g930 Vvi18g907 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007671 2 3 2 0 2 0 2 1 1 1 1 0 0 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14370 PF16596 MFMR_assoc 7.40E-09 No_clan Vvi TF