Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g908 ATGGCGGGTCGTAGGGACGGGCTTTTGACGAGAAACAGCAACGGTAACTCGCTTCGCGGATCTCGAATCGCCGTAGCTATTACGATCGGAGTTCTTCTAGGATGCGTCTTCGCCTTCTTGTATCCTCACGGATTATTCCGCTCCGATCCACAAATCATAAATCCTCGGCTTGTAAAATCTAATCTCCAGGTCGGTTCTCCCTCATGTGAATCCCCAGAACGGCTTAAGATGCTCAAGTCTGATATTGTGGCATTATCAGAGAAGAATGCTGATCTGAAGAAGCAGGTCAGGGAGCTAACGGAAAAGCTACGGCTGGCTGAACAGGGAAAAGACCAGGCTCAAAAGCAGTTTATGGTATTGGGTGAACAGCATAAAGCCGGGCCTTTTGGTACGGTAAAGAGTTTGAGAACCAACCCAACTCTTATCCCTGATGAATCTGTGAACCCAAGGTTGGCAAAGATCTTGGAGGAAGTTGCTGTTAGTAAAGAGCTTATAGTTGCTCTCGCCAATTCAAATGTGAAATCATCATTGGAGGTGTGGTTCGCTAACATCAAGCGAGTGGGTATACCCAATTACCTGGTTGTGGCATTAGATGACGACATTGAAAATTTCTGCAAATCCAATAATGTCCCAGTGTACAAGAGAGACCCAGATGAAGGTATTGATTCAGTTGCAAGATCAGGAGGTAACCATGCTGTCTCAGGACTGAAGTTTCAGATCTTGAGGGAATTCTTGCAGCTGGGTTACAGTGTTCTGCTCTCAGATATTGATATAGTTTACTTGCAAAATCCATTTGATTATCTTTACCGTGATTCTGATGTGGAATCCATGACTGATGGTCACAACAACTATACAGCTTATGGATATAATGATGTCTTTGATGAACCAGCTATGGGTTGGGCTCGATATGCTCACACCATGAGGATATGGGTATATAACTCTGGCTTTTTCTACATAAGACCTACAATTCCTTCAATTGAGCTTTTGGATCGTGTAGCTGACAGGCTTGCTCACTCAAAAGCATGGGACCAGGCTGTTTTCAATGAGGAGCTCTTTTTCCCTTCACATCCTGGGTACACTGGACTTCATGCTTCCAGGAGAACTATGGATTTCTATCTCTTTATGAATAGTAAGGTCCTCTTCAAGACAGTGAGGAAGGATGCTAAACTAAAAAAGCTGAAGCCAGTCATTGTTCATGTGAATTATCACCCGGATAAACTTTCCAGGATGAAAGCAGTTGTCGAGTTCTATGTTAATGGCAAGCAAGATGCACTGGATCCTTTCCCTGATGGTTCTAACTGGTATTTTATCCTAGAGTGGTTTAGTTGTGAATGCAAATGA 1341 43.62 MAGRRDGLLTRNSNGNSLRGSRIAVAITIGVLLGCVFAFLYPHGLFRSDPQIINPRLVKSNLQVGSPSCESPERLKMLKSDIVALSEKNADLKKQVRELTEKLRLAEQGKDQAQKQFMVLGEQHKAGPFGTVKSLRTNPTLIPDESVNPRLAKILEEVAVSKELIVALANSNVKSSLEVWFANIKRVGIPNYLVVALDDDIENFCKSNNVPVYKRDPDEGIDSVARSGGNHAVSGLKFQILREFLQLGYSVLLSDIDIVYLQNPFDYLYRDSDVESMTDGHNNYTAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVADRLAHSKAWDQAVFNEELFFPSHPGYTGLHASRRTMDFYLFMNSKVLFKTVRKDAKLKKLKPVIVHVNYHPDKLSRMKAVVEFYVNGKQDALDPFPDGSNWYFILEWFSCECK* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10314904 10317391 - Vvi18g908 Vvi18g908 780611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g908 446 PANTHER ARABINOSYLTRANSFERASE RRA3 9 434 IPR044290 GO:0016757|GO:0080147
Vvi18g908 446 Coils Coil 75 116 - -
Vvi18g908 446 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vvi18g908 446 Pfam Nucleotide-diphospho-sugar transferase 189 410 IPR005069 -
Vvi18g908 446 PANTHER GLYCOSYLTRANSFERASE 9 434 - -
Vvi18g908 446 SUPERFAMILY Nucleotide-diphospho-sugar transferases 165 374 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g908 K20783 RRA; arabinosyltransferase [EC:2.4.2.-] - vvi:100255856 874.389
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1138 Cone8ag1186 . . Lsi04g01643 Csa03g04187 Chy04g00531 . Blo17g00809 . Bda08g01292 . . Bpe05g00083 . Bma05g00111 . . . . . . Car09g00151 . . . . . . . . . Cla05g01960 Cam05g2108 Cec05g2119 Cco05g2172 Clacu05g2097 Cmu05g1974 Cre05g2093 . . . Cme04g00611
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003395 3 2 1 2 1 0 2 1 1 2 1 1 0 2 2 0 1 7 1 1 2 2 2 1 1 2 1 4 2 1 49