Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g910 ATGTCATTTCACAATTCTCAACTTGAGGAACAGCTTGCAAATTCTTCGGTTTCTTCTGAACAGAACATCCAATCGGACAGAACCTTGAAATTTCTATCAGGGTCATGTTACCTGCCCCATCCTGACAAAGAAGAAACTGGTGGTGAGGATGCTCACTTCATTTGTATTGATGAACATGCCATAGGTGTGGCAGATGGTGTTGGTGGCTGGGCAGAACTTGGTGTTGATTCAGGGCAGTATGCACGAGAACTCATGTCTAATTCAGTAACTGCAATCCAAGAGGAGCCTAAGGGTTCTGTGGACCCAGCTAGGGTTTTGGAGAAAGCTCACTTTAGCACAAAAGCCAAAGGGTCCTCAACAGCATGCATTATAGCCCTCACAGAGCAGGGTCTCCATGCCATTAATTTAGGGGACAGTGGATTCATAGTGATAAGAGATGGATGTACTGTCTTCCGGTCCCCAGTACAGCAGCATGATTTCAATTTCACCTATCAACTAGAGAGTGGAAATGGTGGTGATTTACCTAGCTCTGGTCAGGTTTTTACAATTCCTGTTGCTCCAGGAGATGTTGTAATTGCTGGCACAGATGGACTGTTTGACAATCTGTACAATAATGAGGTTATCGCAGTGGTGGTTCATGCCACTAGAGCCAGTTTAGGGCCTCAGGTGACAGCTCAGAAGATTGCAGCATTAGCACGCCAACGAGCACAGGACAAAAACCGGCAGACACCTTTCTCCACTGCTGCCCAAGATGCTGGGATCCGTTATTATGGTGGCAAGCTTGATGATATCACTGTCGTTGTTTCCTATATTACCAGTTACAGTAATGGATACCGCTCTTCCAACAGCTCCTGGCTCTGA 861 46.11 MSFHNSQLEEQLANSSVSSEQNIQSDRTLKFLSGSCYLPHPDKEETGGEDAHFICIDEHAIGVADGVGGWAELGVDSGQYARELMSNSVTAIQEEPKGSVDPARVLEKAHFSTKAKGSSTACIIALTEQGLHAINLGDSGFIVIRDGCTVFRSPVQQHDFNFTYQLESGNGGDLPSSGQVFTIPVAPGDVVIAGTDGLFDNLYNNEVIAVVVHATRASLGPQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGIRYYGGKLDDITVVVSYITSYSNGYRSSNSSWL* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10334341 10341089 - Vvi18g910 Vvi18g910 780613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g910 286 Pfam Stage II sporulation protein E (SpoIIE) 60 269 IPR001932 -
Vvi18g910 286 Gene3D - 174 276 IPR036457 -
Vvi18g910 286 Gene3D - 42 167 IPR036457 -
Vvi18g910 286 PANTHER PROTEIN PHOSPHATASE 2 277 - -
Vvi18g910 286 SMART PP2C_SIG_2 31 271 IPR001932 -
Vvi18g910 286 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g910 286 SUPERFAMILY PP2C-like 36 268 IPR036457 -
Vvi18g910 286 ProSiteProfiles PPM-type phosphatase domain profile. 32 271 IPR001932 -
Vvi18g910 286 SMART PP2C_4 22 269 IPR001932 -
Vvi18g910 286 PANTHER PROTEIN PHOSPHATASE 2C 2 277 IPR039123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g910 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - vvi:100252344 566.614
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g935 Vvi18g910 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83