Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g917 ATGACGGTTTCTACCGCTTCGAGAGAAGCCAGTGTAACTTCTTCTGGTAATCAGACGGCACCACAACCAGTGGCACCAACGAAGAAGAAGCGGAATCTCCCTGGAACGCCAGATCCGGATGCGGAGGTGATCGCTTTGTCACCCAAAACCCTAATGGCAACGAACCGGTTCGTCTGCGAGATCTGCAACAAAGGGTTCCAACGCGACCAGAACCTTCAACTTCACCGGCGCGGCCACAACCTCCCATGGAAGCTTCGGCAAAGAACAAGCAAAGAGGTTCGGAAGCGAGTATACGTTTGTCCCGAACCTACCTGTGTTCATCACGATCCGACGAGAGCGCTAGGAGATCTCACCGGCATAAAAAAGCATTTTTGTAGAAAACATGGCGAGAAGAAGTGGAAGTGCGAGAGGTGCTCCAAGAAGTACGCCGTGCAGTCAGATTGGAAGGCGCATTTGAAAACTTGCGGTACCAGAGAATACAAATGCGATTGCGGAACTTTGTTTTCGAGGAGGGATAGCTTCATCACACACAGGGCTTTCTGTGATGCTCTAGCTCAGGAGAGTGCTAGAGCGCAGGTCCTTCCCAGTACCAACACTGAGGAAAATCCAGAAATTGAGACAGCTGTTTCGTCATCCCCAACTGCTCTCTCTCCGTCGACTACTGTGCTGTCCATTCAAAGTCCTGGTGCAGATATGACGGAAAATCCGGTGGGAGTGTTGCAGCAAGCACCAGCGACTATATCGTTAACCACAGGCACAGTGACCAGCTCCAGCAGCAGCAGTACCAGTGTATTTGCAAGTATCTTTGCTCCTTCCACAACACCAGTGACATCCCAGCCACCCCAATCATCGTCCACATTCTCCGATCTAATATGCGCAATGGGTCGCTCCAAGCGTTCCACCACCCTACCATCATCTTCCACGGCAGAGCCCACCCTCCGTCTCTCCTCTTCTCTATACCTATCCAACAGTGCCTCCTCCCTCTTTCCAACCCCTGATCAGAACCATCGGCACTACGCTCCATCTCCACAGCCGGCAATGTCGGCTACCGCATTATTGCAGAAGGCAGCACAAATGGGGGCAGCAGCATCAAACGCGTCCTTGCTTCGGGGCTTAGGATTGGCAATGTCACCGTCTTCGTCTGCACAGCAAGATAGCAGCACCACCCAGTGGAGCGGGCATGTAAAGGCAGATAGCAATCCGGTAGGAGCTGGGCTGGGATTGGGGCTTCCCTCGGAGGGAGGCCCTGCTTTAACCGGGCTAATGATGAGTCCATCATCGCTATTTGTGAACAAGCCAACCACTCTTGATCTTCTGGGGCTGGGTATGGTTCCTGGTGGCGCTTCCACGGCTGGACTCTCTGCCCTGCTTACTTCTATCAGCGGTGGCGGCCTTGATATTGCAGCTGCCGGATCCCCTTTTGGAGGAGCAGCAGCTGCTACTGCCGAGGCTGCACCTGATAGAAAGCCTAATGGGCCTGCTCTCCTATAG 1491 53.52 MTVSTASREASVTSSGNQTAPQPVAPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHLKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAQESARAQVLPSTNTEENPEIETAVSSSPTALSPSTTVLSIQSPGADMTENPVGVLQQAPATISLTTGTVTSSSSSSTSVFASIFAPSTTPVTSQPPQSSSTFSDLICAMGRSKRSTTLPSSSTAEPTLRLSSSLYLSNSASSLFPTPDQNHRHYAPSPQPAMSATALLQKAAQMGAAASNASLLRGLGLAMSPSSSAQQDSSTTQWSGHVKADSNPVGAGLGLGLPSEGGPALTGLMMSPSSLFVNKPTTLDLLGLGMVPGGASTAGLSALLTSISGGGLDIAAAGSPFGGAAAATAEAAPDRKPNGPALL* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10395349 10398504 - Vvi18g917 Vvi18g917 780620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g917 496 MobiDBLite consensus disorder prediction 1 40 - -
Vvi18g917 496 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g917 496 Gene3D Classic Zinc Finger 112 191 - -
Vvi18g917 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 474 - -
Vvi18g917 496 MobiDBLite consensus disorder prediction 376 396 - -
Vvi18g917 496 MobiDBLite consensus disorder prediction 192 231 - -
Vvi18g917 496 Pfam Zinc-finger of C2H2 type 57 79 - -
Vvi18g917 496 Gene3D Classic Zinc Finger 35 103 - -
Vvi18g917 496 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 2 474 - -
Vvi18g917 496 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Vvi18g917 496 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vvi18g917 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vvi18g917 496 MobiDBLite consensus disorder prediction 192 235 - -
Vvi18g917 496 SMART c2h2final6 133 153 IPR013087 -
Vvi18g917 496 SMART c2h2final6 57 79 IPR013087 -
Vvi18g917 496 SMART c2h2final6 98 128 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g938 Vvi18g917 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14371 PF12874 zf-met 0.0036 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g917 K25869 - vvi:100260826 876.315