Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g919 ATGGGCTGGATTCGGATTACCAGGCTTGGGCGGTGGCTGCGGATCGTTGCTCAGGTAAATCAGTTAGCTTCCACAGTTAGTACCGTACTTACAATGGCAGATGGTCATGAAACAGATAAGAACATTGAGATATGGAAGATCAAAAAGTTGATCAAGGCACTGGAAGCTGCTCGAGGCAACGGGACAAGCATGATTTCTCTTATCATGCCTCCGCGGGATCAAATATCAAGGGTTACTAAGATGCTGGGAGATGAGTTTGGCACAGCTTCAAACATTAAAAGCAGGGTGAATCGTCAATCTGTTTTGGGAGCAATCACATCTGCACAGCAAAGATTGAAGTTGTACAACAAGGTTCCTCCCAATGGGCTTGTGCTGTACACTGGTACTATTGTGACAGAAGATGGAAAGGAGAAGAAGGTGACTATTGACTTTGAGCCTTTTAGGCCTATAAATGCTTCCCTTTACCTATGTGACAACAAATTCCATACAGAAGCATTGAATGAACTTTTGGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGTACCCTCTTTGGCACATTAAGTGGCAATACTCGTGAGGTGCTTCATAAATTTACTGTTGACCTCCCAAAGAAACATGGAAGAGGCGGGCAATCAGCACTACGGTTTGCTCGTCTTCGAATGGAGAAGCGTCACAACTATGTGAGGAAGACAGCAGAGCTTGCTACACAATTTTTTATCAATCCTGCCACTAGCCAGCCCAATGTTGCAGGATTAATACTGGCTGGCTCAGCTGACTTCAAGACTGAGCTGAGTCAGTCTGACATGTTTGATCCCCGTCTTCAGGCCAAAATACTTAATGTAGTGGATGTTTCTTATGGAGGGGAGAATGGTTTCAATCAGGCAATCGAGTTGTCCTCAGAGATCTTATCCAATGTGAAGTTCATTCAGGAGAAGCGCTTGATTGGTAAATACTTTGAGGAGATCAGTCAGGACACTGGAAAGTATGTCTTTGGTGTGGAAGATACACTGAAAGCTTTGGAGATGGGTGCTGTTGAGATACTGATTGTGTGGGAGAATCTGGACATGAATAGGTATGAAAAGATGTCATTGCTAGAGTGGTTTGCCAATGAGTACAAGCGCTTTGGTTGTACACTTGAGTTTGTCACCAACAAATCACAAGAGGGATCCCAGTTCTGCAGGGGCTTTGGTGGGATTGGTGGAATCCTCCGTTACCAGCTAGACATGCGATCATTTGATGAGCTTTCTGATGATGGAGAAAACTACGATGATTCTGAATAG 1293 43.93 MGWIRITRLGRWLRIVAQVNQLASTVSTVLTMADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVEILIVWENLDMNRYEKMSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDDGENYDDSE* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10428995 10432146 + Vvi18g919 Vvi18g919 780622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g919 430 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 37 171 IPR024049 -
Vvi18g919 430 Pfam eRF1 domain 1 49 169 IPR005140 -
Vvi18g919 430 SUPERFAMILY Translational machinery components 173 307 - -
Vvi18g919 430 Gene3D eRF1 domain 2 167 308 IPR042226 -
Vvi18g919 430 Pfam eRF1 domain 2 175 308 IPR005141 -
Vvi18g919 430 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 43 363 IPR004403 GO:0003747|GO:0006415
Vvi18g919 430 Pfam eRF1 domain 3 312 411 IPR005142 -
Vvi18g919 430 Gene3D - 310 363 IPR029064 -
Vvi18g919 430 Gene3D - 364 430 IPR029064 -
Vvi18g919 430 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 32 363 - -
Vvi18g919 430 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 364 430 - -
Vvi18g919 430 Gene3D eRF1 domain 1 30 166 IPR024049 -
Vvi18g919 430 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 32 363 IPR004403 GO:0003747|GO:0006415
Vvi18g919 430 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 364 430 IPR004403 GO:0003747|GO:0006415
Vvi18g919 430 SUPERFAMILY L30e-like 309 413 IPR029064 -
Vvi18g919 430 SMART eRF1_1_2 35 171 IPR005140 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g919 K03265 - vvi:100248954 761.14