Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g92 ATGGGTAACTGCTGCGGAGCTCAAGCGAACGTAAACCCAGCGTCCAGCAAACCTCCCAGTCCAGAGCTGTCGAATAATAACATCAAACAAGATAAATCGATCAAAGAAAGAAGCGGCAGTGGCAGTGGAAATGGCAGCTCCAATGGTGGCGAAAAAACTGAGACAGCTGAAACGGGGAAAATCATAACGCCCAATTTGAAGATGTTCACTTTCGCAGAGCTGAAGAGCGCCACCAGAAACTTCAGGCCAGACACAATGTTGGGTGAAGGAGGTTTTGGCAGAGTTTTTAAGGGATGGGTCGATGAAAAGACTTACGCCCCGACAAAGGTCAGCGTCGGCATACCAGTTGCAGTGAAGAAATCCAATCCTGAGAGCGAACAGGGCCTCAAGGAATGGCAGTCTGAGGTGAAATTCTTGGGAAAATTCACTCATCCCAACCTTGTGAAGCTCCTGGGTTATTGTTGGGAGGATAAGCAATTCCTCCTTGTTTATGAATACATGCAAAAGGGAAGTTTGGAGAATCATCTTTTCCGAGTTGGAGCGGAGCCACTTACATGGGAAATTCGCCTTAAAATAGCAATAGGAGCAGCTCGAGGTCTAGCTTTTTTACACACTTCTGAGAAGACAGTGATCTACAGAGACTTCAAGTCCTCTAATGTTTTGTTGGATGGGGATTACAATGCCAAACTTTCTGATTTCGGGTTGGCAAAATTGGGCCCATCGAATGGTGATTCGCACGTGACAACTCGAATTGTTGGCACCTATGGCTATGCAGCTCCAGAATATATAGCCACAGGTCATCTGTACGTGAAAAGCGATGTATATGGTTTTGGAGTAGTTCTACTGGAAATGCTCACAGGCAATCAAGCCCTTGACTTGAACCGGCCGCCGGGACAACAAAATTTGGTGGAATGGGCTAAGCCATCGCTTACCAACAAGAGAAAGCTAAAGAAAATCATGGACCCACGACTAAGGGACCAATACCCATTAAAAGCAGCAGCCCAAGCAGCCGAGCTTATACTCAAATGCCTGGAATCTGATCCCAAAAATAGGCCATCCATGGAAGAGGTGCTAGAAACCTTGAAACGCATCAATGAAATCAAGGAAAAACCAAATAGCAAGGAAGTTAAAGTTGCCACGAATCAACCTCAGCTTCACCATCATCGGTCTCCATATAGTTTTAAAAAGTTTAAAAGTCTGCATATATTTGATGGTGGGTGGACCCTCTGTGTTATTGTAACGTGTGATCAATACGAGTCAGCAAGAAAGGTTGCACCCTTTTTCATTAGGGGAAAACCCTCTACAAGGAGAATTTTATCACGGTACGGATACAATGAATTCACTGGAACTCTACAAAATGTGGAGTGCGTCTCCCTCGAATACGGATGGTGTAGAGGGGGACACCGAGAGGCAAATGGGCCCTGCAGAACCCAGAATTTCTCCATGGAAATGAGCATGGATTGA 1464 45.56 MGNCCGAQANVNPASSKPPSPELSNNNIKQDKSIKERSGSGSGNGSSNGGEKTETAETGKIITPNLKMFTFAELKSATRNFRPDTMLGEGGFGRVFKGWVDEKTYAPTKVSVGIPVAVKKSNPESEQGLKEWQSEVKFLGKFTHPNLVKLLGYCWEDKQFLLVYEYMQKGSLENHLFRVGAEPLTWEIRLKIAIGAARGLAFLHTSEKTVIYRDFKSSNVLLDGDYNAKLSDFGLAKLGPSNGDSHVTTRIVGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGNQALDLNRPPGQQNLVEWAKPSLTNKRKLKKIMDPRLRDQYPLKAAAQAAELILKCLESDPKNRPSMEEVLETLKRINEIKEKPNSKEVKVATNQPQLHHHRSPYSFKKFKSLHIFDGGWTLCVIVTCDQYESARKVAPFFIRGKPSTRRILSRYGYNEFTGTLQNVECVSLEYGWCRGGHREANGPCRTQNFSMEMSMD* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 852592 859459 + Vvi18g92 Vvi18g92 779795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g92 487 ProSiteProfiles Protein kinase domain profile. 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g92 487 PANTHER OS01G0588500 PROTEIN-RELATED 16 386 - -
Vvi18g92 487 Gene3D Transferase(Phosphotransferase) domain 1 167 386 - -
Vvi18g92 487 Gene3D Phosphorylase Kinase; domain 1 65 166 - -
Vvi18g92 487 Pfam Protein tyrosine and serine/threonine kinase 85 361 IPR001245 GO:0004672|GO:0006468
Vvi18g92 487 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 16 386 - -
Vvi18g92 487 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Vvi18g92 487 CDD STKc_IRAK 87 364 - -
Vvi18g92 487 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g92 487 SUPERFAMILY Protein kinase-like (PK-like) 59 361 IPR011009 -
Vvi18g92 487 MobiDBLite consensus disorder prediction 37 59 - -
Vvi18g92 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vvi18g92 487 MobiDBLite consensus disorder prediction 1 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g92 - - - vvi:100259897 778.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g292 Vvi18g92 ECH
Vvi4g1189 Vvi18g92 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g92 . . . . . . . . . Cmo12g00617 . . . Car12g00659 . . Cpe07g00590 . . . . . . . . . . . . . . . . Cone17ag1455 . . . . . Blo17g00905 . . . . . . . . . . Cma12g00679 . Car05g00857 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76399 PF07714 PK_Tyr_Ser-Thr 1.80E-50 CL0016 Vvi PK