Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g921 ATGCGAAAACATCTGTGCTTAGTGTCCAACAACCACATAAAGGATACTATTTCAGCTCTCTGCCTCCGTGGCCGCCAACGGAACTCAGCGTATCAGTTAATTTCCGTTTTAAATTGGCTCCAATTATTCTTGTTAATGGCGGAGCCGATTCGAAGCGGTGGAGATATTTCAACAGAAATCGGTATTCCGACCGGGTTGAATCGGATCAAGACTCGTCGAGAGTCTTCCAAGGATCAACTGAATTGGAAACCCGATGATGACGATAAGTTTCATGAGTCGCGGCCTCGTGGAATTTCAAGGCCGCCAGCGAATCAGAAGCATAACAAAGGACATGCAAAATTCGCTGGCTCTATAGAAGGATTCCATAAAGGAAAGAAGATTGCTCGGTGGTTCACCTCACATCTTTCCAAGGATTCCAGTCAAGGTTTTGATGATGTTCCTCCAAAAGTTCAGGACAGTAACTCTAAAGTCAAGGCACCCGACAAGGAAGGTTCTACAAGAACTAAACAATGGAAGGAGGGGAAGCATTTGACTGGAAAACAATCTTCACCAGAGGGCTTAAGCAGTATTAAAGTGCCAAAAGGTTTAAAAAGTTTTTCACATGAGTTAGGACCAAAGGGTGGCATTCCACCTTCCCATCCTCGGGCGCATAGCTACAATGATTTGAAGGAGCTTCTGGGATCATTGCATTCAAGATTTGATGCTGCTAAAGAAGTGGTGAATGTGGAGCTGTCTAAATTGTTGATTCTGGCTCAGATTATGATAGTAATGGGAAGAGTGATGCCAAACATGAATTACAGTGGCGAAACAGGGTATCTTCTCTCCTTGAGCAAACTTGGTGCAGATGGATCTGATTCGGTAATTTGTCGGATATGTGAGGAAAATGTTCCTACTTCTCATTTGGAATCTCATTCTTATATATGTGCTTATGCAGATAAGTGTGATTTAAAATATCTAGATATAGATGAACGCCTTTCAAAACTTGCTGAGATTTTGGAACAAATTATAGAGTCACGTTGTTCTCCCAAGATAAGTGAGTGGCGAAATAAAGGTGTGGAAGGGATGTTTGAGGACCTTCATGAGATGGACACTGCCTGCATAGATGATTCCTACCTTACAAACCCCCTTAACTTGAAGGGCCACTGGGGTACAAAGCTTAGCCAGTATGGTGCACCCTCCTCAACTGGAAGCATGACATCAATGTCCTCCACAAATACCCCGAGAGCAGGTCATTTTGACTTATTCTGGCTAGAGCACAACAATCCTTCTAAGCTGGAGGATGTGCAACAGATGGCTGACCTTGCAGACATTGCCCGCTGTGTGGCAGGCACAGATCTATCTAAAGAAGGATCCTGTGACTTTTTGCTCGCCTGTATGGAAGACTTACAGGATGTTTTACAGAATACCAAGCTCAAATCTCTTGTAATAGACACATTTGGAGGCCGGATAGAGAATCTTCTAAGAGAAAAGTATATTCTCGCTTGTGAATTAGCAGATACAAAAAGTCCCAAGAGTGATAACAGAATTAAGGAGAGCTCTAGGCTTTTGTTTGATAATGCATCCCATAGTAGTACAATGTCAACTCCTCTACATCCCTTACATAAAGAACGGACAAGCATTGATGATTTTGAGATTATCAAACCAATTAGCAGAGGTGCCTTTGGTAAAGTGTTCCTTGCACGAAAGCGAACAACAGGAGATTTATTTGCAATAAAGGTCCTCAAGAAATTGGATATGATACGGAAAAATGATATTGAACGGATATTAGCAGAGCGTAACATACTTATTACAGTTAGAAACCCTTTTGTGGTTCGCTTTTTTTATTCATTCACCTGTAGAGATAATGTCTATTTGGTTATGGAATATCTTAATGGAGGTGATCTATACTCTTTGCTCAGAAAACTCGGTTGCCTTGAAGAAGATGTAGCTCGTATATATATAGCAGAACTGGTCCTTGCTTTAGAATACCTGCATTCTCTTGGCATAGTGCATCGTGATCTGAAACCAGACAATATATTGATTGCACATGATGGGCACATAAAGCTAACAGACTTTGGATTATCAAAAATTGGCCTCATAAACAGCACAGTTGATTTATCGGGGCCCGAGACAGATGGAAGCACTGATGCTTTTCTAGATTCCCTTAATCTGCACACTCAACAAACAGATGATAGACATCGACAATCAGCTGTTGGGACACCTGACTACTTGGCTCCAGAAATCCTTCTTGGAACAGAGCATGGTTATGCTGCGGACTGGTGGTCAGTGGGAATTATCCTATTTGAATTAATTACTGGAGTTCCACCATTCACCGCTGAGCATCCAGAGATAATCTTCGACAACATTCTTAACAGGAAAATCCCCTGGCCTTCTGTTCCTGGTGATATGTCCTATGAGGCTCAAGACTTGATTAACAGGTTTCTTATTCATGATCCAGATCTGCGCCTCGGAGCAAATGGATTGTCAGAGGTGAAAACACATCCTTTTTTCAAGGGAGTTAACTGGGACACCCTTGCATTACAAAAGGCCGTCTTTGTACCACAGCCTGATAGTGCAGATGATACAAGTTATTTCGTTTCACGGTACTCTCAAATTCCTAGTGGGTTGCCAGATGAACAGGACTGTAGTGATTCTGCTACTGATTCTAGTGACCTATACTCAAATTCTGGACTTGAGATGGATGAATGCGGTGATCTGGCGGAGTTTGATTCTTCCCCTCTGAACCTATCATTGATAAACTTCTCTTTCAAGAATCTGTCGCAGTTGGCATCCATTAATTATGACGTGCTCTTGCAGACTGGGAAGGATCCAACAAAGTGCAGTCCATCCAAATCTCGAGACACTTAA 2847 42.22 MRKHLCLVSNNHIKDTISALCLRGRQRNSAYQLISVLNWLQLFLLMAEPIRSGGDISTEIGIPTGLNRIKTRRESSKDQLNWKPDDDDKFHESRPRGISRPPANQKHNKGHAKFAGSIEGFHKGKKIARWFTSHLSKDSSQGFDDVPPKVQDSNSKVKAPDKEGSTRTKQWKEGKHLTGKQSSPEGLSSIKVPKGLKSFSHELGPKGGIPPSHPRAHSYNDLKELLGSLHSRFDAAKEVVNVELSKLLILAQIMIVMGRVMPNMNYSGETGYLLSLSKLGADGSDSVICRICEENVPTSHLESHSYICAYADKCDLKYLDIDERLSKLAEILEQIIESRCSPKISEWRNKGVEGMFEDLHEMDTACIDDSYLTNPLNLKGHWGTKLSQYGAPSSTGSMTSMSSTNTPRAGHFDLFWLEHNNPSKLEDVQQMADLADIARCVAGTDLSKEGSCDFLLACMEDLQDVLQNTKLKSLVIDTFGGRIENLLREKYILACELADTKSPKSDNRIKESSRLLFDNASHSSTMSTPLHPLHKERTSIDDFEIIKPISRGAFGKVFLARKRTTGDLFAIKVLKKLDMIRKNDIERILAERNILITVRNPFVVRFFYSFTCRDNVYLVMEYLNGGDLYSLLRKLGCLEEDVARIYIAELVLALEYLHSLGIVHRDLKPDNILIAHDGHIKLTDFGLSKIGLINSTVDLSGPETDGSTDAFLDSLNLHTQQTDDRHRQSAVGTPDYLAPEILLGTEHGYAADWWSVGIILFELITGVPPFTAEHPEIIFDNILNRKIPWPSVPGDMSYEAQDLINRFLIHDPDLRLGANGLSEVKTHPFFKGVNWDTLALQKAVFVPQPDSADDTSYFVSRYSQIPSGLPDEQDCSDSATDSSDLYSNSGLEMDECGDLAEFDSSPLNLSLINFSFKNLSQLASINYDVLLQTGKDPTKCSPSKSRDT* 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10446103 10477665 - Vvi18g921 Vvi18g921 780624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g921 948 Gene3D Phosphorylase Kinase; domain 1 540 878 - -
Vvi18g921 948 MobiDBLite consensus disorder prediction 868 887 - -
Vvi18g921 948 SUPERFAMILY Protein kinase-like (PK-like) 540 865 IPR011009 -
Vvi18g921 948 ProSiteProfiles AGC-kinase C-terminal domain profile. 831 926 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi18g921 948 PANTHER SERINE/THREONINE PROTEIN KINASE IRE4-RELATED 277 946 - -
Vvi18g921 948 PANTHER SERINE/THREONINE PROTEIN KINASE IRE4-RELATED 46 278 - -
Vvi18g921 948 MobiDBLite consensus disorder prediction 155 179 - -
Vvi18g921 948 MobiDBLite consensus disorder prediction 71 118 - -
Vvi18g921 948 SMART serkin_6 543 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g921 948 MobiDBLite consensus disorder prediction 71 96 - -
Vvi18g921 948 CDD STKc_MAST_like 549 835 - -
Vvi18g921 948 Gene3D Transferase(Phosphotransferase) domain 1 623 847 - -
Vvi18g921 948 ProSiteProfiles Protein kinase domain profile. 543 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g921 948 MobiDBLite consensus disorder prediction 138 191 - -
Vvi18g921 948 PANTHER SERINE/THREONINE-PROTEIN KINASE 277 946 - -
Vvi18g921 948 PANTHER SERINE/THREONINE-PROTEIN KINASE 46 278 - -
Vvi18g921 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Vvi18g921 948 Pfam Protein kinase domain 543 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76400 PF00069 Pkinase 3.20E-64 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g921 - - vvi:100259179 1328.15