Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g926 ATGGGTAAGGGTTTCAAGCTCCGATTCTCTCTGATTCATTCCCTCCAATTCTGCCGTTCCAGAAACCGTTCTGCTCTACCGGAAAGTCCTGTGCCGGCGTCTCATAGGCTCTCGACGGTCAACCGTAAGGGGTCTGAAACCTCCTACGACTGCGACACCGAATCGGTGGAATACTCGTGGAAGAAGGATGGAAAGTGGCACGTAATCTCCAGAGTCTACGAGGACGGCCCTCGCCGGAAAATTTGCTACTCCCCTTTTCCTGGCGAATCCGATGGCGACTTGTCGCCGAATCAACCGCAGAAGATGGCCAAGGAGAAGAAAGTGAGAAAGAAAAAGAAGAAAGGGACGGTCCCGAGTGTCCGCACAAGCACGTCTTCGGGAGATAGTGGCTGGTTCAGCAGCGAAGGTGGTGACTATGACGAGGAGACCGAAACCCTACTCTCCTCTTCCAGAAGCTTCTCGAACGACTCTTCTTTCGAATTCAATCATCCACTAGAGACCATAAGCGAAGAATCAAAGAGCGTCGTAGGCAAGCGCGATAGGATGAACAATTCAAAGAAGGCTCGACGACTGAAACGCCACATTTCGAAGAACTGCAGAACAGGATCATCATCCTCATCATCATCAGGCAGCGGAAATCCAAAAACGACATCGTCGCCAGAAGCTGAGTCGCCAGCGAGAGTGTCGGTGTACCAAGGCAGGATACCGTGTAGATTAGATGGGAAGGTGAGAGAGAGCTTCGCGGTGGTGAAGAAATCCAAGGATCCGTACGAAGACTTCAAGAAGTCGATGGTGGAGATGATAATGGAGAAACAGATGTTCGAAACAAAGGATTTGGAGCAGCTGCTGCAATGTTTTCTATCCCTGAATTCGCCGCAGCATCACGGAATCATCGTGGAGGCCTTCTCCGTGGTTTGGGAGGGTTTGTTCTGTAAATCACCACCAATGGCTCGACGTGTTTCGAGGTGTCTCTGA 975 50.97 MGKGFKLRFSLIHSLQFCRSRNRSALPESPVPASHRLSTVNRKGSETSYDCDTESVEYSWKKDGKWHVISRVYEDGPRRKICYSPFPGESDGDLSPNQPQKMAKEKKVRKKKKKGTVPSVRTSTSSGDSGWFSSEGGDYDEETETLLSSSRSFSNDSSFEFNHPLETISEESKSVVGKRDRMNNSKKARRLKRHISKNCRTGSSSSSSSGSGNPKTTSSPEAESPARVSVYQGRIPCRLDGKVRESFAVVKKSKDPYEDFKKSMVEMIMEKQMFETKDLEQLLQCFLSLNSPQHHGIIVEAFSVVWEGLFCKSPPMARRVSRCL* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10516737 10517835 - Vvi18g926 Vvi18g926 780629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g926 324 Pfam Transcriptional repressor, ovate 253 310 IPR006458 -
Vvi18g926 324 MobiDBLite consensus disorder prediction 84 227 - -
Vvi18g926 324 PANTHER TRANSCRIPTION REPRESSOR OFP7 1 318 - -
Vvi18g926 324 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 318 IPR038933 GO:0045892
Vvi18g926 324 MobiDBLite consensus disorder prediction 118 132 - -
Vvi18g926 324 ProSiteProfiles OVATE domain profile. 249 308 IPR006458 -
Vvi18g926 324 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 247 309 IPR006458 -
Vvi18g926 324 MobiDBLite consensus disorder prediction 198 225 - -
Vvi18g926 324 MobiDBLite consensus disorder prediction 183 197 - -
Vvi18g926 324 MobiDBLite consensus disorder prediction 146 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g926 - - - vvi:100252240 577.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g945 Vvi18g926 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g926 . . . . . . . . . . . . . . Sed07g1696 . . Bhi04g00262 Tan02g1946 Cmetu03g1824 . Hepe10g0654 . Lcy13g1997 Cla08g01501 Cam08g1991 Cec08g1566 Cco08g1703 Clacu08g1681 . Cre08g1464 Cone4ag1902 Cone7ag1816 Cone17ag1333 . . . . Cme03g01968 . . . . . . . . . . . . . Car05g00192 . Cpe11g00192 . . . . . . . . . . . . . . . Lsi08g01406 Csa02g02040 Chy03g01473 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011669 1 0 2 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 2 1 1 1 1 1 1 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14372 PF04844 Ovate 1.10E-25 No_clan Vvi TF