Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g930 ATGGCTGACCGCACTGATTCCGATTCTCGTCATAACCTTACCCTCACCACTCCTCACCAGATCTCCAAAGATGTGCAAGGATCTGACAATCCTATTCCACTTTCACCACAGTGGCTTCTCCCAAAGCCAGGAGAGAATAAGCATGGAATGGTGACTGGGGAAAATCACTTCGGCCCATACCCTGGTTATGCCAATCGTGCAGATACGATGAAATCCTCTGGAAATGGTGATGGAATGCTTGATTCTCTGAAGAAAAAAGATGTTTTTAGGCCAACCCTGCCTGATATGGAAACTGGGCGTCGTGATCGCTGGCGCGATGAAGAAAGAGACACTAATTCCTCTATTCGCAGAGATCGTTGGAGGGAGGGAGATAAAGAGCTTAGTGATACTCGCAAGATGGATCGTTGGACGGAGAACTCATCCACAAGGCACTTTGGAGAAGCCCGTCGTGGTCCATCTGAACGTTGGAATGATTCGAGTAACAGGGAGACTAATTATGATCAGCGGCGGGAGAGCAAGTGGAACACACGCTGGGGCCCTGATGATAAGGATACCGAAGGTTTGCGTGAGAAGTGGATGGACTCTAGCAGAGATGGTGAGATGCCTCTTGATAAAGGATTGTCTACTAATCATGGGAAGGATGAGAGGGACGGGGATCTTTATCGACCATGGAGACCTAACTCTTTGCAAAGTCGGGGCAGGGCAGAGCCTTCTCATCATCAATCTCTTACACCTAATAAACAAGTTCATACATTTTCTTATGCTCGTGGACGTGGGGAGAATCCTCCTCCAACCTTTGCACTTGGTCGTGGCAGGGTTAATTCTGGTGGAAATCTGATGAACAATTATTCTACTATTTCTCAGTCTTTAGGAACTGTATCAGACAAATGTGAAAGTGGTCATGGAGAGCCTTCTCCATTACGGTATAATAGGACAAAATTGCTTGATGTGTACAGGATGACTGACATTAGATCGTCTGGAAAACTATTAGATGGCTTTGTGCAAGTGCCTTCTCTTTCGCAGGAGGAACCATTAGAGCCTCTTGCACTCTGTGCACCTACTTCTGAAGAATTGGTTATTTTGAAAGGAATTGATAAAGGGGACATAGTAAGCAGTGGTGCACCTCAGATTTCTAAAGAGGGTTCTATTGGACGGAACTCTGAGTTTCTTCCATCAAGACGAACCAAGCCTGGTAGTAGAGAAGATTTACCCCTTGCAGTTGATGATTCTAAAGATGAAAGCAATGACAATTCAAAAGGTGGTTATTCAAGCTACTCGGATGGTTCGCCCTATGAAAAGCAGATGCATTATTATGGTTCCAACTCAAAAATGGAAGCCATGGTGGACCATCAGATGTATCCAGATAACAAATTCCATGCTGAGGCTTTGAGAGAAGATGGCACGCCTTATAGAAAGTCTGATGAGGTGCCTATTAATAGAGACTTGAGCATGCATGGCAATTCCTCTATTCATCCTGGGAACACGTGGCGAGCTCCATCATTGGGAGAACGGTCACATACAGTCACTCATGATCGGAGAGATATTCCAACTGATGTCAGGTCAGTACCATCTGACATGGGGTGGGCACAGCCAAAGAAGGAAATGAATAGTGAATGGACAAGTGGTTTGGCTAACCCACCTTACTCTAAAGATGAATTGAAATGGCAAATCAGCGAGGATCCCATTATTAAAAGGCAGGCATCACTGGTTTTGGACAGGGAGCCGGAAGCCAGAAAACTTTCACAGCCTTCCCCAGAGGACATGGTCTTGTATTATAAAGATCCCCAGGGTGAAATTCAAGGTCCATTTTCTGGAAGTGATATCATTGGATGGTTTGAGGCTGGATATTTTGGCATAGATTTACAAGTTCGCTTAGCAAGTGCACCAAATGATTCCCCTTTTTTTGTGCTTGGTGATGTTATGCCCCATTTACGAGCAAAAGCCAGGCCACCGCCTGGTTTTGGTGTTCCAAAACAGAATGAAATTACTGATGCTTCAAGTAGGCCAAACTATAGTAGCTTTGGAAATCTTCATGCAGGTTCAAGTGAGATTGATGTAATAAAGAATGAACCAAGGCATAAACATGGTTCAGCAACAGAAGCTGAGAATAGATTTTTGGAGTCACTGATGTCTGGTAATATGGGCAGTCCCCCTGTTGAGAAGTTTGCTTTCTCTGAAGGTTTGCAAGGATATATTGGGAATAACGCTGGTGGTGCACCCCCAATGGGAGTAGAAAGTGGAAATAACCTATACCTCTTGGCTAAGCGAATGAATCTTGAAAGGCAGAGGTCTTTACCAAATCCTTATCCATATTGGCCTGGGAGAGATGCAACTTCCATGGCTCCAAAGTCTGAGATGGTCCCAGACTCTGCGGCCCCACATCCAAAACTCCTATCTTCAATGACTGACAATTCTCGTCAATCTTCTAATTCTAATGCAGACTTGATGTCAATCCTTCAAGGCATATCTGATCGGTCTTCTTCTGGTGTAAGTAATGGAGTTACTGGATGGTCAAATTTTCCTGTACAAGGTGGCTTGGACCCACTCCAAGATAAGATGGACTTGCAACATGGTCAGAATTTCCCTCCCCAAGCTGCATTTGGAATCCAACAGCAGAGGCTGCAACCGCAGAACCAACCCTCTCTAACAAATTTACTTGCTCAAGCTATGGATAATCCCTCTGGTATTTTGGCCCCAGAGAAGCTACTCTCTTCTAGTCTCCCTCAAGATCCGCAATTATTAAGTATGTTGCAACAGCAGTACTTGATGCAGTTACATTCCCAGGCAACTGTTCCTGCACAACAGCTCTTGTTGTTGGATAAACTGTTGCTCCTTAAGAAACAGGAGGAGCAGCAACAGTTGTTGCGCCAACAACAACAATTGCTTTCTCAGGTTCTGTCTGAGCATCATTCTAACCAGATTTTTGGTCAGGCTGCTGCAATGGCAGTAGGAAATGCTTCTGTGGATCATTCTCGGCTTCAACCACCTCAAGAGTTGTTTCAGATGCCAGTTCCCGCTATGCAGGATGAACGGGCTACTAACCTTGCAAGTGGTCCTCCGCCAATCTCCCAGGATGCGAATTACAATGTTAGTTCAGAAGGCTCTTTTCTACATCTGCCACATCAAATGTTTGGGAATACTACCCACCAAAAGAGCTATGGTACTATGCTGCCAGAACAGATTGACGAAATTCAACAAAAGGAACCATTGCCAGCATCTGCAGTGATTGATAGCTCAGCCTTGTTGCTGTCAACCAACCTATCTACTGAGGAGCCTTCTGCTTTGCAGAATTCCACCCTTACTTCTGATGGCCAGGCTGCTGAAAACCTGGAGAAGAATTTACAGGACACCCTGATAATCAATGAACCTGTCACTGTTGCAAACTCTGTTCAATTGGATGTTACTCCTGAGGAACTGCAGATTGAAAAAGAGCGATGCAATGATGAGCCATCTTTGGAGACAGAATCAAAAAGTGTTGAAGTACGTGAGGTAAGAAAAGCTTCTGAAAAGAGGACAAGAAAGCAGAAGTCCTCAAAATCGCAGTCTTCATCGGACCAGGCAAAGGGAACACATATTATTAATGGCCCATCTCCTTTGGGAATTCCTAGAGATGATTCAAAAACTGCAGAAGGAAAGAGTGAGCCACAGCTAGTTGGGTCTGTCCCAGTGCAGAATGCACAAGTACATTCTGGACAACGGGCTTGGAAACATGCTCCTGGTTTCAAGGCTAAGTCATTATTAGAAATTCAAGAGGAAGAACAGAGGAAGGCTAAGGCAGAAATGGTGGTTTCTGAGATCCCCTTGTCTGTTAATGCTGTGAATTTGCCAACTCCTTGGGCTGGAGTCATTTCCAATTCAGATTCTAAAACTTCTAGAGAAATTCATCAAGAAGCTGCTAGCACCGATTTAGATGCTATTGATGATGACAACTTTATTGAGGCTAAAGACACTAAAAAGAGTCGCAAAAAGTCTGCAAAGGCTAAGGGTGTTGGGGCAAAGGTCTCAGCTCCCAGTGCCTCTGTTGACATATCTGTGGGATCAAGTCCAGTTGAGAAAGGAAAAATTTCTCGTCTTGTGCAGCAAGAAAAGGAGGTGTTGCCTGCACCCCCATCAGGTCCTTCTTTAGGAGATTTTGTTCCATGGAAAGGGGAGCATGTGAACCCTTCCCCTGCTCCAGCATGGTCCTCAGACTCTGGAAAGCTTCCTAAACCCACATCTTTGAGGGACATCCAAAAGGAGCAAGGAAAAAAGGCTTCTTTAGTCCAAAACCATGTCCAGATACCAACTCCTCAGAAATCCCAGCCAACTCAGGTCACCCGTGGGAGTGGTCCTTCATGGTCCATTTCTGCATCATCTCCTGCCAAAGCATCTCCTATCCAGATTAAAGGAGAGGATGATCTATTCTGGGGCCCTATTGATCAATCCAAGCCTGATTCTAAGCAGGTGGATTTCCCTCATCTTGCAAGCCAGGGCAGTTGGGGAACCAAAAATACTCCAGTAAAAGGAAGTCCAGGAGGATCATTGAGCCGTCAGAAATCCATGGGTGGGAGAGCAACAGAGCATTCTCTTTCATCTTCACCTGCATCAGCTCAATCATCCCTAAAGGGAAAAAGGGATGCCATGAGCAAGCATTCAGAAGCCATGGATTTCAGGAATTGGTGCGAGAGTGAGTCTGTTAGGCTCACTGGGACAAAGGATACTAGTTTCCTGGAATTTTGTTTGAAGCAATCTAGATCAGAGGCTGAGATACTTCTGACAGAGAACCTGAATGACCCCAATCACGAGTTCATTGACAAGTTCCTTAACTACAAGGAGTTGTTATCAGCAGATGTACTTGAAATTGCCTTTCAAAGTCGGAACGATTCAAAGGCCACTGGATTCAGTGCCGGGGACATGAATTCTGACAATTTAGGTTTTGGGGACTTTGAACGAGATTACTCAGCTGAGATTCAGAGTGTGGAGGATTAG 4968 45.03 MADRTDSDSRHNLTLTTPHQISKDVQGSDNPIPLSPQWLLPKPGENKHGMVTGENHFGPYPGYANRADTMKSSGNGDGMLDSLKKKDVFRPTLPDMETGRRDRWRDEERDTNSSIRRDRWREGDKELSDTRKMDRWTENSSTRHFGEARRGPSERWNDSSNRETNYDQRRESKWNTRWGPDDKDTEGLREKWMDSSRDGEMPLDKGLSTNHGKDERDGDLYRPWRPNSLQSRGRAEPSHHQSLTPNKQVHTFSYARGRGENPPPTFALGRGRVNSGGNLMNNYSTISQSLGTVSDKCESGHGEPSPLRYNRTKLLDVYRMTDIRSSGKLLDGFVQVPSLSQEEPLEPLALCAPTSEELVILKGIDKGDIVSSGAPQISKEGSIGRNSEFLPSRRTKPGSREDLPLAVDDSKDESNDNSKGGYSSYSDGSPYEKQMHYYGSNSKMEAMVDHQMYPDNKFHAEALREDGTPYRKSDEVPINRDLSMHGNSSIHPGNTWRAPSLGERSHTVTHDRRDIPTDVRSVPSDMGWAQPKKEMNSEWTSGLANPPYSKDELKWQISEDPIIKRQASLVLDREPEARKLSQPSPEDMVLYYKDPQGEIQGPFSGSDIIGWFEAGYFGIDLQVRLASAPNDSPFFVLGDVMPHLRAKARPPPGFGVPKQNEITDASSRPNYSSFGNLHAGSSEIDVIKNEPRHKHGSATEAENRFLESLMSGNMGSPPVEKFAFSEGLQGYIGNNAGGAPPMGVESGNNLYLLAKRMNLERQRSLPNPYPYWPGRDATSMAPKSEMVPDSAAPHPKLLSSMTDNSRQSSNSNADLMSILQGISDRSSSGVSNGVTGWSNFPVQGGLDPLQDKMDLQHGQNFPPQAAFGIQQQRLQPQNQPSLTNLLAQAMDNPSGILAPEKLLSSSLPQDPQLLSMLQQQYLMQLHSQATVPAQQLLLLDKLLLLKKQEEQQQLLRQQQQLLSQVLSEHHSNQIFGQAAAMAVGNASVDHSRLQPPQELFQMPVPAMQDERATNLASGPPPISQDANYNVSSEGSFLHLPHQMFGNTTHQKSYGTMLPEQIDEIQQKEPLPASAVIDSSALLLSTNLSTEEPSALQNSTLTSDGQAAENLEKNLQDTLIINEPVTVANSVQLDVTPEELQIEKERCNDEPSLETESKSVEVREVRKASEKRTRKQKSSKSQSSSDQAKGTHIINGPSPLGIPRDDSKTAEGKSEPQLVGSVPVQNAQVHSGQRAWKHAPGFKAKSLLEIQEEEQRKAKAEMVVSEIPLSVNAVNLPTPWAGVISNSDSKTSREIHQEAASTDLDAIDDDNFIEAKDTKKSRKKSAKAKGVGAKVSAPSASVDISVGSSPVEKGKISRLVQQEKEVLPAPPSGPSLGDFVPWKGEHVNPSPAPAWSSDSGKLPKPTSLRDIQKEQGKKASLVQNHVQIPTPQKSQPTQVTRGSGPSWSISASSPAKASPIQIKGEDDLFWGPIDQSKPDSKQVDFPHLASQGSWGTKNTPVKGSPGGSLSRQKSMGGRATEHSLSSSPASAQSSLKGKRDAMSKHSEAMDFRNWCESESVRLTGTKDTSFLEFCLKQSRSEAEILLTENLNDPNHEFIDKFLNYKELLSADVLEIAFQSRNDSKATGFSAGDMNSDNLGFGDFERDYSAEIQSVED* 1656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10529301 10547399 - Vvi18g930 Vvi18g930 780633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g930 1655 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1302 - -
Vvi18g930 1655 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1300 1647 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 207 222 - -
Vvi18g930 1655 SMART gyf_5 588 643 IPR003169 GO:0005515
Vvi18g930 1655 CDD GYF 587 644 IPR003169 GO:0005515
Vvi18g930 1655 MobiDBLite consensus disorder prediction 1 248 - -
Vvi18g930 1655 Coils Coil 944 964 - -
Vvi18g930 1655 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1302 - -
Vvi18g930 1655 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1300 1647 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 371 434 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 776 811 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 80 201 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 11 33 - -
Vvi18g930 1655 SUPERFAMILY GYF domain 577 644 IPR035445 -
Vvi18g930 1655 Pfam GYF domain 591 627 IPR003169 GO:0005515
Vvi18g930 1655 MobiDBLite consensus disorder prediction 1485 1536 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 231 248 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 504 519 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 797 811 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 1363 1541 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 482 543 - -
Vvi18g930 1655 Gene3D - 575 654 IPR035445 -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 375 393 - -
Vvi18g930 1655 ProSiteProfiles GYF domain profile. 587 638 IPR003169 GO:0005515
Vvi18g930 1655 MobiDBLite consensus disorder prediction 394 416 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 1144 1236 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 1416 1456 - -
Vvi18g930 1655 MobiDBLite consensus disorder prediction 1144 1178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g930 - - - vri:117906616 2915.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44