Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g936 ATGCTTCGCCTTTGGGGTAAATCTCATCATGATCAAGAGAAGGATTTGCAGAAGTCTGATTCCAAGGTTCATGAGCTTAAGGCTGCACTTGGACCACTATCTGGACGTAGTTTACAGTATTGCAATGATGCATGCTTGAAGAGATATTTGGAAGCTCGGAACTGGAATGTAGACAAGTCAAAGAAAATGCTGGAAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTCATGACCGGCATGGGAGAACTGTTCTCATACTGAGACCAGGAAAGCAGAATACAACAGCACTAGACAATCAGGTCCGTCACTTAGTATATCTCTTGGAGAACGCTATCCTTAATCTTCCAGAAGATCAAGAACAAATGGTATGGTTGATAGACTTCACTGGAATGACATTCAGCAACAGTGTGCCCATCAAAACTGCTCGAGACACAATAAATATTTTACAGAACCATTACCCTGAGAGGCTATTCTTAGCATTTCTTTACAGCCCTCCACGGATTTTTGAAGCTTTCTGGAAGGCTGTCAAATATTTATTGGATGCCAAAACATTCCAGAAGGTGAAATTTGTGTACCCAAAGGATAAAAATAGCGTTGAGTTGATGAGTTCATATTTTGATGTGGAAAATCTTCCAACCGACTTTGGAGGAAAGGCCACGATGAATTATGATCATGAGGAATTCTCAAGGCTAATGACCCAAGACGATGTTAAATCTGCCAATTTATGGGGATTCGGCGACAAGCTGCAGCATGTTAGTAATGGACATTCTGTAGCAGAGGTGTCTCCAGAGCCTGCATGCCTAGCACCAGCAAGCTGA 885 42.37 MLRLWGKSHHDQEKDLQKSDSKVHELKAALGPLSGRSLQYCNDACLKRYLEARNWNVDKSKKMLEETLTWRSTYKPEEIRWSDVATEGETGKVFRANFHDRHGRTVLILRPGKQNTTALDNQVRHLVYLLENAILNLPEDQEQMVWLIDFTGMTFSNSVPIKTARDTINILQNHYPERLFLAFLYSPPRIFEAFWKAVKYLLDAKTFQKVKFVYPKDKNSVELMSSYFDVENLPTDFGGKATMNYDHEEFSRLMTQDDVKSANLWGFGDKLQHVSNGHSVAEVSPEPACLAPAS* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10641022 10646767 + Vvi18g936 Vvi18g936 780639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g936 294 CDD SEC14 89 240 IPR001251 -
Vvi18g936 294 PANTHER RANDOM SLUG PROTEIN 5-LIKE 10 292 - -
Vvi18g936 294 SUPERFAMILY CRAL/TRIO N-terminal domain 22 83 IPR036273 -
Vvi18g936 294 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g936 294 Pfam CRAL/TRIO domain 91 239 IPR001251 -
Vvi18g936 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Vvi18g936 294 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vvi18g936 294 PANTHER GH16843P 10 292 - -
Vvi18g936 294 SUPERFAMILY CRAL/TRIO domain 81 254 IPR036865 -
Vvi18g936 294 Pfam CRAL/TRIO, N-terminal domain 40 66 IPR011074 -
Vvi18g936 294 Gene3D - 6 271 IPR036865 -
Vvi18g936 294 SMART sec14_4 87 242 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g936 - - - vvi:100262592 607.446
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g966 Vvi18g936 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82