Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g939 ATGTTGCTCTCTCGTTGTAAATTCGCGGTGTTTGGGGTCGGAAGCCGATCATATGGTGCGGCATTCAATGCTGTTGCGAGGGGTTTCTCGAAGCGGATGCGGAAGCTTGGGGGTTTGCAGGTTTTGCCTGTTGAGGAAGGTGATGTTGATGCGGGTGATTTGGATGAGGTTTTTGATGTTTGGAGTAGGAAGTTGATTAGTGTTTTGAAGGGTGGTTCTGTGGAAAATGGGGTTTTTGATGGTTCTATGGCTGTCGTGGAGAAGAATGGAGCCGAGGGGAGTATTGTTGATCTTGAGGATATTGCGGGTAAAGGTCCTTCAAGGAAAACAAAGACAATGACAACTTCTAGTGGGACAATTAATGGGGAAAAAGAAATGGTGACTCCAGTGATCAGAGCGAGCCTAGAAAAGCAGGGATACAAAATTATTGGTTCTCATAGCGGTGTCAAAATTTGTAGATGGACAAAGTCACAACTTAGAGGCCGTGGTGGCTGCTACAAGCACTCATTTTATGGCATAGAGAGTCACAGGTGCATGGAAGCAACCCCAAGTTTGGCATGTGCCAACAAATGTGTTTTCTGTTGGAGGCACCACACTAATCCTGTAGGAAAGAGCTGGCGCTGGAAGATGGATGATCCTTTGGAGATTGTGAATTCTGCCATTGACCTCCATACGAAGATGATAAGGCAAATGAAAGGTGTTCCTGGCGTTAAAGCGGAACGATTATCAGAAGGTCTTTCACCGAGGCATTGTGCTTTATCACTTGTTGGTGAACCTATCATGTATCCAGAAATTAACTCACTCATAGAAGAACTGCACCGGAGGCGGATTTCTACCTTTCTGGTGACAAATGCACAGTTTCCTGAAAAGATTAAAGAGTTGAAACCTGTTACTCAGTTATATGTTAGTGTAGATGCGGCAACAAAGGACAGCTTGAAGGCAATTGATAGGCCACTCTTTGGGGACTTTTGGGAGCGATTTGTTGATTCCTTGAAAGCTCTCAGGGAAAAACAACAACGAACTGTTTATCGCTTGACCTTGGTTAAAGGCTGGAATACTGAAGAAATAGATGCTTATTTTAATCTTTTTTCCATTGGGAAGCCCGACTTTGTTGAAATCAAAGGAGTTACATATTGTGGATCGTCTGCTACATCAAAGTTGACGATGGAGAATGTGCCCTGGCATGCTGATGTGAAAGCCTTTTCAGAGGCCTTAGCTCTGAAGAGCAAAGGGGAGTATGAGGTTGCTTGTGAGCACGTCCACTCGTGCTGTGTTCTCTTGGCAAAAACCGATAAGTTTAAGGTCAACAACCAATGGTTCACATGGATAGACTATGAAAAGTTCCATGATCTGGTAGCTTCTGGAAGACCTTTTAATAGCAAGGATTACATGGCTGCCACACCATCCTGGGCTGTCTACGGAGCAGAGGAAGGTGGGTTTGATCCAGGTCAGTCTCGTTATAGGAAGGAGCGGCATCATAGACCAAAAACCACTGATTAA 1500 44.67 MLLSRCKFAVFGVGSRSYGAAFNAVARGFSKRMRKLGGLQVLPVEEGDVDAGDLDEVFDVWSRKLISVLKGGSVENGVFDGSMAVVEKNGAEGSIVDLEDIAGKGPSRKTKTMTTSSGTINGEKEMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWRWKMDDPLEIVNSAIDLHTKMIRQMKGVPGVKAERLSEGLSPRHCALSLVGEPIMYPEINSLIEELHRRRISTFLVTNAQFPEKIKELKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFVDSLKALREKQQRTVYRLTLVKGWNTEEIDAYFNLFSIGKPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALKSKGEYEVACEHVHSCCVLLAKTDKFKVNNQWFTWIDYEKFHDLVASGRPFNSKDYMAATPSWAVYGAEEGGFDPGQSRYRKERHHRPKTTD* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10658104 10663144 - Vvi18g939 Vvi18g939 780642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g939 499 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 2 494 - -
Vvi18g939 499 Gene3D Aldolase class I 110 442 IPR013785 -
Vvi18g939 499 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 2 494 IPR034556 GO:0008033|GO:0051539
Vvi18g939 499 SUPERFAMILY Radical SAM enzymes 184 364 - -
Vvi18g939 499 CDD Radical_SAM 183 383 - -
Vvi18g939 499 SFLD Radical SAM 123 433 IPR007197 GO:0003824|GO:0051536
Vvi18g939 499 Pfam Radical SAM superfamily 183 362 IPR007197 GO:0003824|GO:0051536
Vvi18g939 499 Pfam Flavodoxin 3 61 IPR008254 GO:0010181
Vvi18g939 499 ProSiteProfiles Radical SAM core domain profile. 171 414 IPR007197 GO:0003824|GO:0051536
Vvi18g939 499 MobiDBLite consensus disorder prediction 482 499 - -
Vvi18g939 499 SFLD tRNA wybutosine-synthesizing 123 433 IPR034556 GO:0008033|GO:0051539
Vvi18g939 499 Pfam Wyosine base formation 366 429 IPR013917 -
Vvi18g939 499 Gene3D - 1 75 IPR029039 -
Vvi18g939 499 MobiDBLite consensus disorder prediction 477 499 - -
Vvi18g939 499 ProSiteProfiles Flavodoxin-like domain profile. 1 66 IPR008254 GO:0010181
Vvi18g939 499 SUPERFAMILY Flavoproteins 3 69 IPR029039 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g939 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] - vvi:100255870 1010.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34