Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g945 ATGGGAGGGAACCACAAGAGTGTGGATGATGTAACGTTGCAGTTTCAACATACAGTTTGCAGTAATGATGGGCAAGGCCCCTTTATTTGGTCTTCTCCGGAAGGGGGTTGTCAAATTGATATAGGGAAAAAAATCTTCTGCAACAGATCTTTAAATATGAAGAATATTGTTGCTGTTGGGTTTGATATGGATTACACTTTGGCTCAATATATGCCTGAAACTTTTGAATCCCTTGCTTATGAAGGCACAATCAGAAAGCTAGTGTATGATTTGGGATACCCTCGTGAGTTGCTGGAATGGACCTTTGATTGGAAGTACATGGTCAGAGGCTTGGTTCTTGATAAAAAGAGAGGCAACATTTTGAAGATGGATAGACACAAATATGTTAAGGTAGCCTATCATGGATTTAGAGAGATGTCAAAGGAAGATAAAGTTGGGACGTACGGAAATACTTTGATACGAGATTCTTTTGATGAGCCTGACTATGCACTTATTGACACCCTTTTTTCGCTAGCAGAAGCGTACTTGTTTGCCCAACTCGTTGACTTCAGGGATAAGTATCCTTCAAAAGTTCCAGATGGTGCCGACTACTCTCGTATGTATAAGGATGTTCGAGCTGCAGTTGACTTGTGCCATCGTGATGGGACTTTGAAGAAAATGGTTGCAAAAGATCCTAAAAAGTATATTAATGATGATACCTCAATAGTGCCCATGATGAAGATGCTTAGAGATTCTGGCCGTTCAACATTCTTAGTGACAAATAGTTTATGGGACTATACAAATATCGTGATGAATTTCCTTTGTGGCCCCCGGATGTTGGATGGTAGCGCCTCTTCCAATTTTGACTGGCTTCAGTACTTTGATGTTGTCATTACTGGCAGTGCAAAACCAAGTTTTTTCCATGATGACAATCGCGCCAATCTTTTTGAGGTTGAACCTGAGTCGGGAATGCTACTTAACACTGATAATGGCACTCCTATGCCACAGGTGGGAAACACATCACCAAGATTCCCATTGAAGGGGCTGAAAAAGACATGTAGAGTCTTCCAGGGAGGCAGTGTTGGTCATTTGCACAAACTACTTTCAATTGAGTCAAGTTCACAGGTTCTTTATGTTGGGGATCATATCTATGGGGATATATTGCGCAGCAAAAAAGTTCTGGGCTGGAGAACAATGCTGGTTGTTCCGGAGCTCGAGAGAGAGGTTGAACTCCTCTGGGAATTGAGGGATACCAGAAAGCAACTTCGATTGTTAAGGAATGAGCGAGATCTCATTGAAGACAAAATACATCATTTGAAGTGGTCTCTCAAGTTTGATGGTGTCCATCTTGATGAGAAGCCAATGTTAGCTACTGAACTAAGCAAATTGGAGTCTCAGAGGGAGAAAGTTCGCCTCTGTCATCAACAGGCTCAACGGGAATGTCATCAAAAGTTTCACAAGGTCTGGGGACAACTCATGAAGACTGGCTATCAGAACTCTCGCTTTGCACATCAGGTGGAGAGATTTGCGTGTCTCTACACTAGCCAAGTGACCAACCTCAGCCTCTACTCTCCAGACAAATACTACAGACCCAGTGAGGATTTCATGCCCCATGAATTTGATATCCTCTCCATCTGA 1617 42.49 MGGNHKSVDDVTLQFQHTVCSNDGQGPFIWSSPEGGCQIDIGKKIFCNRSLNMKNIVAVGFDMDYTLAQYMPETFESLAYEGTIRKLVYDLGYPRELLEWTFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEDKVGTYGNTLIRDSFDEPDYALIDTLFSLAEAYLFAQLVDFRDKYPSKVPDGADYSRMYKDVRAAVDLCHRDGTLKKMVAKDPKKYINDDTSIVPMMKMLRDSGRSTFLVTNSLWDYTNIVMNFLCGPRMLDGSASSNFDWLQYFDVVITGSAKPSFFHDDNRANLFEVEPESGMLLNTDNGTPMPQVGNTSPRFPLKGLKKTCRVFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDTRKQLRLLRNERDLIEDKIHHLKWSLKFDGVHLDEKPMLATELSKLESQREKVRLCHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFDILSI* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10686780 10698400 + Vvi18g945 Vvi18g945 780648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g945 538 Coils Coil 453 473 - -
Vvi18g945 538 Gene3D - 41 88 IPR023214 -
Vvi18g945 538 Gene3D - 204 423 IPR023214 -
Vvi18g945 538 PIRSF NT5C2 26 537 IPR016695 -
Vvi18g945 538 PANTHER BNAA07G31970D PROTEIN 8 537 - -
Vvi18g945 538 Pfam 5' nucleotidase family 45 533 IPR008380 -
Vvi18g945 538 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 45 415 IPR008380 -
Vvi18g945 538 Coils Coil 408 428 - -
Vvi18g945 538 CDD HAD_cN-II 46 508 - -
Vvi18g945 538 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 8 537 IPR008380 -
Vvi18g945 538 SUPERFAMILY HAD-like 43 534 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g945 - - - vvi:100254078 1096.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48