Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g947 ATGGAAGCTCACAGAAGTCCACCGGAGGTAGTACTGGCAATACTAGTCTTGTTGGTCTTTGTTTCTTGCTTTGCACGTGCCCAGAACAATCCCCTCCGCAACGACACCGAACGGTCAGCGTTGTTCGACCTCCGGTCGTCGTTGGGGCTCAGGGCCAAGGACTGGCCCAGGAGGAGTGAGCCATGCTGGAACTGGACCGGCGTGGCGTGCCAGAACGGTCGAGTCGTTGGAATTAGCGTTTCCGGTTTGCAGCGAACCCATGCCGGGCGTGTCAATCCTCAGTTCGCCGTGGATTCTCTGGCCAATTTGTCCCTCTTAGCTACATTTAACTCATCAGGTTTTGAGCTTCCCGGCTCCATTCCGGACTGGTTGGGGCAAAGCCTGAGCGCACTCCAAGTGCTCGATCTTCGGTCTGCCTCAGTGAAAGGTCCGATTCCTCAGTCACTAGGAAGCTTGGGCACGCTGTCCTTGCGCTTTCTTGATGTGTCTGGTAATAATTTCACGGGTGTTCTTGCAAATCTCAGCTGGAATGTTAATTCCACTAACACTATGTTCAACCTCTCGAACAATCTATTTTATGGAGCCCTGCCTACTCCACTCGGAAAATTCAGCTTAATTGATCTATCTGAAGATTGTAGACTGTTTTATGCTGAGAGAAACCTAAGTTTTGACAATTTTGGAGCACCTAGTCCGGCTCAGCCGCCACTGCCTGGATCTTCCACAAACAGCAGCAAAAGATGGATATTTATATTGGTGGGTCTATTTGGTGGACTTGGCCGTAGCCCACTACCTGCTAAGGTTTCTATTAACTTTTCGGGTGTGGGAGACTTGTTTACATATGAGCAGATTCTCTGTTACACAGATGGTTTTAGTGAAATAAACCTGATCAAACATGGCCACTCCGGAGATCTCTTCCGTGGCATCTTGGAAAGTGGGGCCCCTGTAGTTGTCAAAAGGGTTGATTTGCGGGCCTTGAAGAAAGAATCATACATGATGGAATTGGATGTGTTGAACAAGGTCTCACATATGAGATTGGTCCCACTCTTGGGGCACTGCTTGGAGCATGATAGCGAGAAGTTACTGGTATATAAATACATGCCAAATGGAGACTTGTCTAATTCCTTATACAGGGTTACGAATTTGGAAGACGACAATCTACAGTCTCTTGATTGGATTACCAGATTGAAAATTGCAATAGGAGCTGCAGAAGGTCTATCTTATCTCCATCATGAGTGTTCCCCACCCCTTGTCCACAGAGATGTTCAAGCAAGTAGTATCCTGCTTGATGATAAATTTGAAGTGCGACTTGGAAGCTTAAGTGAGGTTTGTGCTCAAGAAGGGGACTCTCACCAAAATGTAATCACAAAGTTGTTAAGGAAGCCACAGACCTCTGAACAAGGCTCTTCTGGCTTATTGTCGGCAACCTGCGCTTATGATGTGTACTGTTTCGGGAAGGTCTTGCTTGAGCTTGTGACAGGTAAGCTTGGCATCAGCAAGTCCGATGATGCCACCACAAGGGATATGGGCCATGGCAATTGTGGCCAGGTCATGCCTTAA 1557 47.78 MEAHRSPPEVVLAILVLLVFVSCFARAQNNPLRNDTERSALFDLRSSLGLRAKDWPRRSEPCWNWTGVACQNGRVVGISVSGLQRTHAGRVNPQFAVDSLANLSLLATFNSSGFELPGSIPDWLGQSLSALQVLDLRSASVKGPIPQSLGSLGTLSLRFLDVSGNNFTGVLANLSWNVNSTNTMFNLSNNLFYGALPTPLGKFSLIDLSEDCRLFYAERNLSFDNFGAPSPAQPPLPGSSTNSSKRWIFILVGLFGGLGRSPLPAKVSINFSGVGDLFTYEQILCYTDGFSEINLIKHGHSGDLFRGILESGAPVVVKRVDLRALKKESYMMELDVLNKVSHMRLVPLLGHCLEHDSEKLLVYKYMPNGDLSNSLYRVTNLEDDNLQSLDWITRLKIAIGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVCAQEGDSHQNVITKLLRKPQTSEQGSSGLLSATCAYDVYCFGKVLLELVTGKLGISKSDDATTRDMGHGNCGQVMP* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10701652 10708870 - Vvi18g947 Vvi18g947 780650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g947 518 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 154 209 - -
Vvi18g947 518 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 10 156 - -
Vvi18g947 518 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 262 507 - -
Vvi18g947 518 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 209 259 - -
Vvi18g947 518 SUPERFAMILY Protein kinase-like (PK-like) 267 500 IPR011009 -
Vvi18g947 518 SUPERFAMILY L domain-like 48 208 - -
Vvi18g947 518 ProSiteProfiles Protein kinase domain profile. 290 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g947 518 PANTHER RECEPTOR-LIKE PROTEIN 55 10 156 - -
Vvi18g947 518 PANTHER RECEPTOR-LIKE PROTEIN 55 262 507 - -
Vvi18g947 518 PANTHER RECEPTOR-LIKE PROTEIN 55 209 259 - -
Vvi18g947 518 PANTHER RECEPTOR-LIKE PROTEIN 55 154 209 - -
Vvi18g947 518 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi18g947 518 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Vvi18g947 518 Gene3D Phosphorylase Kinase; domain 1 266 365 - -
Vvi18g947 518 Gene3D Ribonuclease Inhibitor 33 233 IPR032675 -
Vvi18g947 518 Pfam Protein tyrosine and serine/threonine kinase 295 495 IPR001245 GO:0004672|GO:0006468
Vvi18g947 518 Gene3D Transferase(Phosphotransferase) domain 1 366 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g947 - - - vvi:100259194 677.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g596 Vvi18g947 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g947 Blo01g01562 . Bda01g00529 . Bpe02g00391 Bpe04g00214 . . . . Cma01g01910 Cma09g00158 Car01g01491 . . Cpe06g00113 . . . . . . . . . . . . . . . Cone4ag1911 Cone7ag1825 . . Lsi04g01665 Csa03g04208 Chy04g00510 . . . . . . . . . . Cmo01g01972 Cmo09g00157 . . . Car09g00140 . Cpe02g00127 . . . . . . . Cla05g01941 . . . . . . . . . Cme04g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001821 3 2 2 1 2 2 4 1 1 2 2 1 4 2 1 3 1 3 4 1 2 1 2 2 2 3 1 4 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76402 PF07714 PK_Tyr_Ser-Thr 1.80E-21 CL0016 Vvi PK