Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g95 ATGGATTTGGATTTCATGGACGAGTTGTTTTTAGGAGGATGCTGGTTAGAGACAACTGATGGATCTGAGTTCTTGCTACAGAGTCCATCTAATTCTGGTTCTGTCTTTGATCCTTCATCTTTATGGCCTACTTTTGGATCAAATAATTCTCTTAGTCAGAGTATGACAAATGTTGCAGGGTATCCAGTTCAATCAGAAAACTATTTAATGGATGATTTTGATCTTAGTAGAAGGTGGTGGATTCGACCCAAGTCAAGTCCGGGTCCTTCATCTACTGTAATGGAGAGATTAATTCGAGCACTTAGTTACATACGAGGTTCCACAAAAAATAAAGACGCACTTATTCAAATATGGGTGCCAGTAAATAGGGGTGGCCGAAGAGTTCTTACAACTAATGACCAACCTTTCTCGCTCGATCCCAGCTGCCCGAGGCTTGCAAGGTATAGAGACATTTCTGTGAGCTATCAGTTCTCAGCTGAGGAGGATTCCAATGAATTGGCTGGACTGCCTGGGCGAGTTTTTTTGGGCAAGGTTCCTGAGTGGACTCCTGATGTTCGCTTCTTTAGAAGTGAGGAGTACCCTAGAGTCGACTATGCTCAACATTTTGATGTCCGTGGAACTCTCGCACTTCCAGTTTTTGAACAAGGCAGCCAGACATGCTTGGGTGTTATTGAGGTTGTGATGACCACTCAAAAGAGTAACTATCGTCCTGAGCTGGAAAGCGTCTGCAAAGCACTTGAGGCTGTTGATCTGCGGAGTTCTGAAGTTCTGAGCACAAGGAATGTAAAGGCATGCAACAAGTTCTACCAAGCCGCATTACCCGAGATTCTAGAGGTCTTGACATCCGCCTGTGGAACACATGGACTGCCTTTGGCTCAAACTTGGGTCCCATGCATCCAACAAGGTAAATGGGGCTCCCGGCACACTGATGGGAACTACATCCACTGTGTTTCCACTGTGGATTCTGCTTGTTGTGTAGCTGATCCCCGTACCCAGGGTTTTCATGAGGCTTGCTCTGAGCACCACCTACTGAAAGGTCAAGGCATTGCTGGAAGAGCATTCACAACTAATGAACCGTGCTTCTCAGCTGACATAACCTCCTTTAGCAAGACTCAATATCCCCTCTCTCATCATGCGAGGATGTTTGGACTGTGTGCTGCTGTTGCAATACGCCTGCGGAGTATTCACGTTCCTGTGTCTGACTTTGTCTTGGAGTTCTTTTTGCCTGTAGATTGCAGGGATCCTGAAGAACAAAAGGGGATGCTTTGTTCATTGTCCATCATCATACAGAAGGTTTGCCGGAGCCTACGGGTTGTCACAGACAAGGAGCTGGAGGGGGAAACTCCTTCCCTGGTTAGTGAATTGACAGTCCTCTCAGATGGAAGTCCCGGCAGGGAAGAAACACAGAAGGCCCAACAGAATTCAAGCCAACAAGGAAGTTTTGACTGTAGAGATGATTCTACTTTTGGTAAGAGTAGCTTATCTAGTGTGGGTAAAACAGGAGAAAGAAGACGTAGCAAGGCAGAACAAACCATCACACTGCAAGTTCTTCAGCAATATTTCGCCGGGAGCCTAAAAGATGCTGCAAAGAGCATTGGAGTTTGTCCCACAACCTTGAAAAGGATATGCAGGCAACATGGGATCAAACGTTGGCCTTCTCGGAAAATTAAGAAGGTTGGTCACTCCTTACATAAAATACAACTTGTGATCGACTCAGTCAAAGGTGCATCTGGTGCTTTTCAAATCGGTAACTTCTATTCAAAATTCCCAGAACTGGCCTCGCCAGACGTTCAACCTGAGGGAGACAATTCCAGCACTGGAGTTGCTGCATCAAAATCTCTTTCATCTTCATGCAGCCCGAGTTCCAGTTCAAGTCAGTGCTGTTCCACTGGGACTCAGGAACATCCTTCCACATCCATACCACAAAGTGGTAGCCTGGCATCTCAAGAAGGGGATGCCTGGAGAGTGAAGGTCACGTATGGGGATGAGAAGATCCGTTTCCGGATGCAAAGTAACTGGGGATTAAAAGACCTGCGGCAAGAAATTGGGAGGCGATTCAATATAGATGACAGCAGTGGATTCCATCTCAAGTATTTGGATGATGACTTAGAGTGGGTGTTGTTAACATGTGAGGCCGATTTTGAGGAGTGTAAGGACATATGCGGATCGTCTCAGAACCACGTGATAAGGCTCGCCATCCATCAAATTTCTCATCATCTGGGAAGTTCTTTAGGTAGTACTTGCCCTTAG 2250 46.09 MDLDFMDELFLGGCWLETTDGSEFLLQSPSNSGSVFDPSSLWPTFGSNNSLSQSMTNVAGYPVQSENYLMDDFDLSRRWWIRPKSSPGPSSTVMERLIRALSYIRGSTKNKDALIQIWVPVNRGGRRVLTTNDQPFSLDPSCPRLARYRDISVSYQFSAEEDSNELAGLPGRVFLGKVPEWTPDVRFFRSEEYPRVDYAQHFDVRGTLALPVFEQGSQTCLGVIEVVMTTQKSNYRPELESVCKALEAVDLRSSEVLSTRNVKACNKFYQAALPEILEVLTSACGTHGLPLAQTWVPCIQQGKWGSRHTDGNYIHCVSTVDSACCVADPRTQGFHEACSEHHLLKGQGIAGRAFTTNEPCFSADITSFSKTQYPLSHHARMFGLCAAVAIRLRSIHVPVSDFVLEFFLPVDCRDPEEQKGMLCSLSIIIQKVCRSLRVVTDKELEGETPSLVSELTVLSDGSPGREETQKAQQNSSQQGSFDCRDDSTFGKSSLSSVGKTGERRRSKAEQTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLHKIQLVIDSVKGASGAFQIGNFYSKFPELASPDVQPEGDNSSTGVAASKSLSSSCSPSSSSSQCCSTGTQEHPSTSIPQSGSLASQEGDAWRVKVTYGDEKIRFRMQSNWGLKDLRQEIGRRFNIDDSSGFHLKYLDDDLEWVLLTCEADFEECKDICGSSQNHVIRLAIHQISHHLGSSLGSTCP* 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 908407 914042 - Vvi18g95 Vvi18g95 779798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g95 749 PANTHER PROTEIN NLP8 485 639 IPR045012 GO:0003700
Vvi18g95 749 PANTHER PROTEIN NLP4 49 479 - -
Vvi18g95 749 PANTHER PROTEIN NLP4 637 746 - -
Vvi18g95 749 PANTHER PROTEIN NLP4 485 639 - -
Vvi18g95 749 SUPERFAMILY CAD & PB1 domains 643 740 - -
Vvi18g95 749 ProSiteProfiles RWP-RK domain profile. 498 579 IPR003035 -
Vvi18g95 749 MobiDBLite consensus disorder prediction 459 506 - -
Vvi18g95 749 Pfam PB1 domain 655 735 IPR000270 GO:0005515
Vvi18g95 749 Pfam RWP-RK domain 511 559 IPR003035 -
Vvi18g95 749 PANTHER PROTEIN NLP8 49 479 IPR045012 GO:0003700
Vvi18g95 749 PANTHER PROTEIN NLP8 637 746 IPR045012 GO:0003700
Vvi18g95 749 CDD PB1_NLP 655 735 IPR034891 -
Vvi18g95 749 SMART PB1_new 653 736 IPR000270 GO:0005515
Vvi18g95 749 MobiDBLite consensus disorder prediction 459 497 - -
Vvi18g95 749 MobiDBLite consensus disorder prediction 616 648 - -
Vvi18g95 749 ProSiteProfiles PB1 domain profile. 653 736 IPR000270 GO:0005515
Vvi18g95 749 Gene3D - 650 735 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g95 - - - vvi:100253057 1343.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g285 Vvi18g95 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g95 ECH 1 747 NLP Transcription Factor Family AT1G20640 53.1 3.5e-226 781.9
Vvi18g95 ECH 1 740 NLP Transcription Factor Family AT1G76350 55.7 1.1e-221 766.9
Vvi2g191 . 187 867 NLP Transcription Factor Family AT1G64530 58.5 7.7e-224 773.9
Vvi2g190 . 82 294 NLP Transcription Factor Family AT1G64530 69.1 7.0e-84 308.9
Vvi2g191 . 266 866 NLP Transcription Factor Family AT4G24020 55.8 6.5e-199 691.0
Vvi2g190 . 161 290 NLP Transcription Factor Family AT4G24020 62.0 1.5e-41 168.3
Vvi5g1280 . 1 831 NLP Transcription Factor Family AT2G43500 50.2 3.8e-210 728.8
Vvi5g1280 . 90 831 NLP Transcription Factor Family AT3G59580 53.2 1.8e-209 726.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14374 PF00564 PB1 6.70E-17 CL0072 Vvi TF