Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g953 ATGTTCTCATTACTCATCTCTTTGAATAATAATTCCTTGTTTGGCAAGTCTAGTGGTTTTGAATGGGTTTCAATTTTATCAAGGTTAATGGAACTGAGCAAGGAAATGGGATTTCCACCCTCCTCAGGCTATAACCCTCTGGCATCCGCGGGATCTGGAGGAGGAGGAGATGATCATCATAATATTGATAATGGCACTACCGTCTTCAAACCACCTCAAATCCCACACCATCATCCTCTTCTTCAACAACAACAAGAGCTGAATCCGCAACAGCAGTCACTCGGCCAGGGATGTGATCCAGATCCAGACCCAGACCCAGACCCAGTTCACGTCGCCGGCGTCCTTGCTGGTGCAACAATTGCGTCCACTATCGGCGGATCGAACTCCAAGGCCTCCGTTAGGTATAGAGAATGCCTCAAGAACCACGCAGCCAACATCGGCGGCAACGTCGTCGACGGCTGCGGGGAGTTCATGCCCGATGGAGAAGAAGGAACCCTAGAAGCTCTGATGTGTGCAGCTTGTAACTGCCACCGGAACTTCCACCGGAAAGAGGTCGACGGCGAGACCATCGGCAGGAGCCTTTCACGCACCCCCTTCAACAATCATCATCCCTCCCATGTCCATGGCTTTTGGGACGAGCATCGGCGCCACCGAAAGCGGTTTAGGACGAAATTCACTCAGGAGCAGAAAGAGAAGATGCTGGAGTACGCAGAGAAGGTGGGGTGGAGAATGCAAAAGCAGTACGAAGAACAAGTTCAACAGCTTTGTGCCGAGGTTGGTGTAAAGAGACAGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCCTAAAGAAACAGCCACAGCCGCAGCAGCAACCCCCGCCATTAGAACAAGCACCAGCGAGAACACCAGAGCAAACGCTATCTTATTCGCCATCTTCTTCTGCTAACACCAAACTAGCTATGATTCGATCTGAAACATGA 966 50.52 MFSLLISLNNNSLFGKSSGFEWVSILSRLMELSKEMGFPPSSGYNPLASAGSGGGGDDHHNIDNGTTVFKPPQIPHHHPLLQQQQELNPQQQSLGQGCDPDPDPDPDPVHVAGVLAGATIASTIGGSNSKASVRYRECLKNHAANIGGNVVDGCGEFMPDGEEGTLEALMCAACNCHRNFHRKEVDGETIGRSLSRTPFNNHHPSHVHGFWDEHRRHRKRFRTKFTQEQKEKMLEYAEKVGWRMQKQYEEQVQQLCAEVGVKRQVFKVWMHNNKNTLKKQPQPQQQPPPLEQAPARTPEQTLSYSPSSSANTKLAMIRSET* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10782940 10787106 + Vvi18g953 Vvi18g953 780656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g953 321 CDD homeodomain 219 279 IPR001356 GO:0003677
Vvi18g953 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 135 184 IPR006456 -
Vvi18g953 321 MobiDBLite consensus disorder prediction 296 321 - -
Vvi18g953 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 117 281 - -
Vvi18g953 321 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 275 IPR006455 -
Vvi18g953 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 117 281 - -
Vvi18g953 321 MobiDBLite consensus disorder prediction 275 321 - -
Vvi18g953 321 Pfam ZF-HD protein dimerisation region 133 185 IPR006456 -
Vvi18g953 321 MobiDBLite consensus disorder prediction 43 76 - -
Vvi18g953 321 ProSiteProfiles 'Homeobox' domain profile. 216 280 IPR001356 GO:0003677
Vvi18g953 321 SUPERFAMILY Homeodomain-like 206 279 IPR009057 -
Vvi18g953 321 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 134 185 IPR006456 -
Vvi18g953 321 Gene3D - 211 279 - -
Vvi18g953 321 MobiDBLite consensus disorder prediction 88 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g953 - - - vvi:100247227 298.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g980 Vvi18g953 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14375 PF04770 ZF-HD_dimer 3.00E-30 No_clan Vvi TF