Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g953 ATGTTCTCATTACTCATCTCTTTGAATAATAATTCCTTGTTTGGCAAGTCTAGTGGTTTTGAATGGGTTTCAATTTTATCAAGGTTAATGGAACTGAGCAAGGAAATGGGATTTCCACCCTCCTCAGGCTATAACCCTCTGGCATCCGCGGGATCTGGAGGAGGAGGAGATGATCATCATAATATTGATAATGGCACTACCGTCTTCAAACCACCTCAAATCCCACACCATCATCCTCTTCTTCAACAACAACAAGAGCTGAATCCGCAACAGCAGTCACTCGGCCAGGGATGTGATCCAGATCCAGACCCAGACCCAGACCCAGTTCACGTCGCCGGCGTCCTTGCTGGTGCAACAATTGCGTCCACTATCGGCGGATCGAACTCCAAGGCCTCCGTTAGGTATAGAGAATGCCTCAAGAACCACGCAGCCAACATCGGCGGCAACGTCGTCGACGGCTGCGGGGAGTTCATGCCCGATGGAGAAGAAGGAACCCTAGAAGCTCTGATGTGTGCAGCTTGTAACTGCCACCGGAACTTCCACCGGAAAGAGGTCGACGGCGAGACCATCGGCAGGAGCCTTTCACGCACCCCCTTCAACAATCATCATCCCTCCCATGTCCATGGCTTTTGGGACGAGCATCGGCGCCACCGAAAGCGGTTTAGGACGAAATTCACTCAGGAGCAGAAAGAGAAGATGCTGGAGTACGCAGAGAAGGTGGGGTGGAGAATGCAAAAGCAGTACGAAGAACAAGTTCAACAGCTTTGTGCCGAGGTTGGTGTAAAGAGACAGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCCTAAAGAAACAGCCACAGCCGCAGCAGCAACCCCCGCCATTAGAACAAGCACCAGCGAGAACACCAGAGCAAACGCTATCTTATTCGCCATCTTCTTCTGCTAACACCAAACTAGCTATGATTCGATCTGAAACATGA 966 50.52 MFSLLISLNNNSLFGKSSGFEWVSILSRLMELSKEMGFPPSSGYNPLASAGSGGGGDDHHNIDNGTTVFKPPQIPHHHPLLQQQQELNPQQQSLGQGCDPDPDPDPDPVHVAGVLAGATIASTIGGSNSKASVRYRECLKNHAANIGGNVVDGCGEFMPDGEEGTLEALMCAACNCHRNFHRKEVDGETIGRSLSRTPFNNHHPSHVHGFWDEHRRHRKRFRTKFTQEQKEKMLEYAEKVGWRMQKQYEEQVQQLCAEVGVKRQVFKVWMHNNKNTLKKQPQPQQQPPPLEQAPARTPEQTLSYSPSSSANTKLAMIRSET* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10782940 10787106 + Vvi18g953 Vvi18g953 780656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g953 321 CDD homeodomain 219 279 IPR001356 GO:0003677
Vvi18g953 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 135 184 IPR006456 -
Vvi18g953 321 MobiDBLite consensus disorder prediction 296 321 - -
Vvi18g953 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 117 281 - -
Vvi18g953 321 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 275 IPR006455 -
Vvi18g953 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 117 281 - -
Vvi18g953 321 MobiDBLite consensus disorder prediction 275 321 - -
Vvi18g953 321 Pfam ZF-HD protein dimerisation region 133 185 IPR006456 -
Vvi18g953 321 MobiDBLite consensus disorder prediction 43 76 - -
Vvi18g953 321 ProSiteProfiles 'Homeobox' domain profile. 216 280 IPR001356 GO:0003677
Vvi18g953 321 SUPERFAMILY Homeodomain-like 206 279 IPR009057 -
Vvi18g953 321 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 134 185 IPR006456 -
Vvi18g953 321 Gene3D - 211 279 - -
Vvi18g953 321 MobiDBLite consensus disorder prediction 88 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g980 Vvi18g953 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14375 PF04770 ZF-HD_dimer 3.00E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g953 - - vvi:100247227 298.13