Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g956 ATGCAGGCACTGTGCTCATTACACCATGCGATGGATAAAGCCAAGCTTCTTATCCAGAACTGCACTGAGTCTAGTAAATTATACTTGGCAATTACAGCAGATAAAATAGTTTTGAGATGTGAAAGAATATGCAACTGTTTGGAGTCGAGTTTAAGACAACTTCAAAATAATGTTCCAACATTGTTGGCTGCAAAGATATCTGGTATTGTTGAAGACCTTAAGGGTGCAAAATTTACTGTGGAATCTGCTGATGATGAGGCTGGAAGGGTTGTTCTAGCATTGGTTCGGCAGGGCATGCCTGACTCTGAATCTATAAATATTTCTGAACTTGAAGCTATTCAAATCGCTGCTTCAAGGCTGAATATTGCATCCCATATGGCACTCTTGATTGAGAAAAGGTCTATAAAGAGGCTAATCGACAAAAGCACTACTATGTATCAGTCCATTGAGCAAGAACCACATGAAGAAAGTGCAATATATGAAACTCTAGCTGATGACTTCAGTGTAACCAAACCTCCTGAGGAATTCAAATGTCCCATCTCTATGAGACTGATGTATGATCCTGTTGTTATAGCTTCTGGGCAAACATATGAAAGATTCTGGATAACTAAGTGGTTCAATGATGGGAATGATACATGTCCAAAGACACATGAAAAGTTGTCTCAGTTTTTCCTCACTCCAAACTCCACAATGAAGAACCTCATTTCGAGGTGGTGCTTGAAGCATGGGATCAGTATTTCTGATCCATGTTCACAACAAGCTCCTGAATCCCTTCCTTTGCAGAAACTTTCACCATCCACTTCCATTGCTAGCTTTGCCAGTTCTCTGAATGGTCTGATGGATATCCTGCAAACCAGCAGTGTGTCATTACACTCTACAGACACCAATTTTCCTTCAAATAAATTGGACATAAGGATGGATAATGGCTCTGCACACGAGCTTCCTCAGATGAATGCTGATTCTCAGGGATGCCAATCTTCTGCAAATAGGCATGGCATGAATTTTGCCTTTCTCTCCAAACTTGCTGCACTTCCATGGGAATCCCAGTGCAAGGAGATTGGAAACGTAAGAGATCAACTGAAAGACAGTATTCAAGCATGTCATTCTACATTTTCCTCTAGTTACATCAAACCGCTGATTAGATTTTTGAAGGATGCATGTGAAAATGGCAATTTACAAGCACAGCGAGATGGAGCTCTAGTTCTTTTGTATTTTCTAAATAAGCGCAGAAGTGAAATGCCACCCTTACATGAAGATGCAATTTATGTTTTAGCATCATTTCTGGACTCAGAAATCACTGAAGAAGCGCTTGCAATCATGGAAGTGTTGTCTTGCCAACGTCATTATAAGTCAGAAATTGTGGCATCTGGTGTTCTTCCTTCCATCATAAAATTCCTTGACACCAAAATGAAGAAATTCCATGTGCTTGCTCTGAAAATACTCTGCAATTTGTCCTCAAACCATGATATGGGATACCACATTGTCTATTTGGATTGCATCCCAAAGCTGGCTCCATTCTTTGTTGATCACAAACTTGCAGGATATTGCATTAAAATTTTCAGAAACTTGTGTGATATTGAGGAGGCTAGGATTACAGTGGCTGAGACCAATCAATGCATCGATTTCATTGCTAAAATACTAGAAAATGGCAGTGAGGAGGAGCAAGAAGATGCCTTGGAAGTTCTTCTTTCTCTATGTCATTACAGGGAGTATGGTCAGCTTTTCAGGGAAGATCACATTGTTCAATCATTGTTCCATATCTCTCTCAATGGGAATGCCAGAGGACAGGAGATTGCTAAGGAATTACTCCAGCTTTTGAGAAATATTAAAAATGACCCCGTTCTAGAATGTTCAAGTTCTAGTTCTACCTCCGATGAAGTCATACAAGATTTTTCATTACATGAATCATATATTGTGACTGGCTATATGTATGATCCCAACAATGTGTTCCTGCCCTTTTTGTACTTAACAGATCAGCAAGCTGGAGTAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAA 2019 39.92 MQALCSLHHAMDKAKLLIQNCTESSKLYLAITADKIVLRCERICNCLESSLRQLQNNVPTLLAAKISGIVEDLKGAKFTVESADDEAGRVVLALVRQGMPDSESINISELEAIQIAASRLNIASHMALLIEKRSIKRLIDKSTTMYQSIEQEPHEESAIYETLADDFSVTKPPEEFKCPISMRLMYDPVVIASGQTYERFWITKWFNDGNDTCPKTHEKLSQFFLTPNSTMKNLISRWCLKHGISISDPCSQQAPESLPLQKLSPSTSIASFASSLNGLMDILQTSSVSLHSTDTNFPSNKLDIRMDNGSAHELPQMNADSQGCQSSANRHGMNFAFLSKLAALPWESQCKEIGNVRDQLKDSIQACHSTFSSSYIKPLIRFLKDACENGNLQAQRDGALVLLYFLNKRRSEMPPLHEDAIYVLASFLDSEITEEALAIMEVLSCQRHYKSEIVASGVLPSIIKFLDTKMKKFHVLALKILCNLSSNHDMGYHIVYLDCIPKLAPFFVDHKLAGYCIKIFRNLCDIEEARITVAETNQCIDFIAKILENGSEEEQEDALEVLLSLCHYREYGQLFREDHIVQSLFHISLNGNARGQEIAKELLQLLRNIKNDPVLECSSSSSTSDEVIQDFSLHESYIVTGYMYDPNNVFLPFLYLTDQQAGVAQLVRACGC* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10801757 10809741 + Vvi18g956 Vvi18g956 780659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g956 672 CDD RING-Ubox_PUB 176 218 IPR045210 -
Vvi18g956 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 245 IPR013083 -
Vvi18g956 672 PANTHER U BOX DOMAIN-CONTAINING 1 640 - -
Vvi18g956 672 Pfam U-box domain 173 242 IPR003613 GO:0004842|GO:0016567
Vvi18g956 672 SUPERFAMILY RING/U-box 167 248 - -
Vvi18g956 672 ProSiteProfiles U-box domain profile. 171 245 IPR003613 GO:0004842|GO:0016567
Vvi18g956 672 Pfam Armadillo-like 423 507 IPR006911 -
Vvi18g956 672 Gene3D - 353 626 IPR011989 -
Vvi18g956 672 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 640 - -
Vvi18g956 672 SMART Ubox_2 175 238 IPR003613 GO:0004842|GO:0016567
Vvi18g956 672 SUPERFAMILY ARM repeat 378 613 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g956 - - - vvi:100262606 1202.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g984 Vvi18g956 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g956 Blo01g01566 . . . Bpe02g00386 . . Bma01g02326 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017270 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6