Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g957 ATGAATTTGAAGCACTTGCTCTCCAGGCAGACAATTAAAGGCTTATCAAGATTCAATGGAAGAATACTATCTCCGTACTCCTATATTTATAAGGATTCTTTCGCTATCACGACCCCCATTTCTCATTCAATTTATTCATCAGGCAGTTATGATTCTACTTTTCAGAACCTTGCATACCCAAAACTGGCTCCGTCCTCAAATAGATATGCTCATTCTCTTCCAGAAACTAAACTGGGCGGCTCAGGCACGGACCCAGAACTTGAATCTGATGATTCTGACGATGGAACCATGAATGAGTTCCTTTCCCGATTTGTCTGGATAATGCGTGGAAAGCTCATGGAAGTATACACTGGCTGCGACAAGCAGACAATTGATGGGATGCTTTTGATCATTGTTCGCAAGGTTGTATCAGAGATGGAGAAGGGTGGCCTTGAGCAGATGCTTAGTGCAGCAGTGGCTGCACCATCTCAGGATTTTAGTGAGGATTTATGGAAGACAGTTTGGGAGGTTAGCAATTTGGTATTGGATGACATGAAGAAGGCAAGAAACAAGGAAAAAATGAAGGGTTTTCTCCAATCTGAAGAAGTTAAGGAAATGTCTAGATTTGCAGGTGAAATAGGCATTAGAGGGGATATGCTGAGGGAGCTCAGGTTCAAATGGGCTCGAGAGAAAATGGAGGAAAGTGAGTTTTATCAGAGTTTGGACCATCTCCGAGAAGAAGCCCAGGCTGAAGAAGGAGAAGAAGCAGTAGGTAATGAGGAGGTTATTGGGGATGACCTTGTAGAGGATGAAAAGAAAGAAAAGGTTGTATCTCTCCCCAAGAGACATGGGAAGATTAGATACGAGATTTATGGTCTTGATCTCTCTGATCCTAAATGGACAGAAGTGGCTGACAAAGTCCATGAGAGAGAAGAAATTATTTGGCCCCAGGAACCCAAACCAATATCAGGAAAATGCAAATTGATAACTGAGAAAATCCTTAATATGAAAGAGGAGGATGACCCTTCTCCCTTGTTGGATGAATGGGCAGAGCTTCTCCAGCCTAGCAGGATTGACTGGATTACTTTACTTGATAGATTGAAAGAAAATAATAGTCATCTATACTTTAAGGTAGCAGAACTTGTTTTGAGCAAAAAGTCTTTCCAAACTAATATTCGTGACTATTCAAAGCTTATTGATGTGCATGCTAAGGAGAATCGCGTGGAAGATGCTGAGAGGATTCTTAAGAAGATGAATGAAAATGATATCTTACCTGATATTCTAACATCCACTGTTTTGGTTCACATGTACAGCAAGGCAGGCAACCTTGAGCGTGCAAAAGAAGCATTTGAAGGCTTGAGGAGCCAAGGCTTCCAACCAGACACAAGGGTCTACAACTCAATGATCATGGCATATGTGAATGCTGGCCAACCCAAGTTGGGTGAGTCACTCATGAGAGAGATGGAGGCAAGGGATATCAAACCCACAAAGGAGATTTACATGTCATTGCTTCAGTCATTTGCCCAACGTGGTGACATTGGTGGAGCCCAACGTATCTCAACCACCATGCAGTTTGCTGGGTTCCAGCCTAGTTTGGAGTCTTGTACATTGCTTGTTGAGGCATATGGGCAAGCTGGCGATCCTGATCAGGCAAGGAACAGTTTTGACTATATGATAAAAGTTGGACACAGGCCTGACGACAGGTGCACTGCTAGCATGATTGCAGCTTATGAGAAAGGAAATTTATTGGATAAGGCTTTGAATCTTCTATTGCAGCTTGAGAAGGATGGTTTTGAGCCGGGGGTTGCTACATATGTTGTTCTGGTGGATTGGCTAGGGAAGATGCAGCTGGTTGATGAAGCTGAGCAACTACTGGGCAAGATAGCTGAGCAGGGTGAGGCTCCTCCTTTAAAGTTTCATGTAAGCCTTTGTGATATGTATTCAAGGGCCGGGGTTGAGAAGAAGGCTCTTCAAGCTCTAGGGGTTGTGGAGGCTAAGAAGGAGCAGTTGAACCCTGAGGATTTTGAGAGGATTATAAAGGGGCTTATAGCTGGTGGGTTTGTGCAGGATGCTCGAAGGATACATGGGGTGATGGAGACTCAGGGGTTTACTGCATCTGAGCAGCTTAAGATCATCCTTATGTCATCTCAAGCCGTTGGTCGTGAAAGACCAACATTGCGATACTCCACCACCGCTCGGACAATGTCTACTATGGAAATCATGCCTACTATCTTTCCATCTATCACTGGTACATGCCTTATCTGA 2244 43.81 MNLKHLLSRQTIKGLSRFNGRILSPYSYIYKDSFAITTPISHSIYSSGSYDSTFQNLAYPKLAPSSNRYAHSLPETKLGGSGTDPELESDDSDDGTMNEFLSRFVWIMRGKLMEVYTGCDKQTIDGMLLIIVRKVVSEMEKGGLEQMLSAAVAAPSQDFSEDLWKTVWEVSNLVLDDMKKARNKEKMKGFLQSEEVKEMSRFAGEIGIRGDMLRELRFKWAREKMEESEFYQSLDHLREEAQAEEGEEAVGNEEVIGDDLVEDEKKEKVVSLPKRHGKIRYEIYGLDLSDPKWTEVADKVHEREEIIWPQEPKPISGKCKLITEKILNMKEEDDPSPLLDEWAELLQPSRIDWITLLDRLKENNSHLYFKVAELVLSKKSFQTNIRDYSKLIDVHAKENRVEDAERILKKMNENDILPDILTSTVLVHMYSKAGNLERAKEAFEGLRSQGFQPDTRVYNSMIMAYVNAGQPKLGESLMREMEARDIKPTKEIYMSLLQSFAQRGDIGGAQRISTTMQFAGFQPSLESCTLLVEAYGQAGDPDQARNSFDYMIKVGHRPDDRCTASMIAAYEKGNLLDKALNLLLQLEKDGFEPGVATYVVLVDWLGKMQLVDEAEQLLGKIAEQGEAPPLKFHVSLCDMYSRAGVEKKALQALGVVEAKKEQLNPEDFERIIKGLIAGGFVQDARRIHGVMETQGFTASEQLKIILMSSQAVGRERPTLRYSTTARTMSTMEIMPTIFPSITGTCLI* 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10817884 10823444 + Vvi18g957 Vvi18g957 780660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g957 747 Gene3D Tetratricopeptide repeat domain 354 524 IPR011990 GO:0005515
Vvi18g957 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Vvi18g957 747 Gene3D Tetratricopeptide repeat domain 534 631 IPR011990 GO:0005515
Vvi18g957 747 Pfam Pentatricopeptide repeat domain 406 467 IPR002885 -
Vvi18g957 747 Pfam Pentatricopeptide repeat domain 512 558 IPR002885 -
Vvi18g957 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Vvi18g957 747 Coils Coil 394 414 - -
Vvi18g957 747 MobiDBLite consensus disorder prediction 73 95 - -
Vvi18g957 747 Pfam PPR repeat 565 591 IPR002885 -
Vvi18g957 747 Pfam PPR repeat 597 625 IPR002885 -
Vvi18g957 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Vvi18g957 747 TIGRFAM PPR: pentatricopeptide repeat domain 424 455 IPR002885 -
Vvi18g957 747 TIGRFAM PPR: pentatricopeptide repeat domain 527 559 IPR002885 -
Vvi18g957 747 TIGRFAM PPR: pentatricopeptide repeat domain 457 489 IPR002885 -
Vvi18g957 747 TIGRFAM PPR: pentatricopeptide repeat domain 388 420 IPR002885 -
Vvi18g957 747 PANTHER OS07G0661900 PROTEIN 1 718 IPR044657 -
Vvi18g957 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Vvi18g957 747 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 1 718 - -
Vvi18g957 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Vvi18g957 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g957 - - - vvi:100267767 1401.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1917 Cone7ag1828 . . . . . . Blo17g00795 . Bda08g01279 . . Bpe05g00093 . . . . . . . . . Cpe11g00210 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010753 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 30