Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g960 | ATGCATTTTAAAAGCATTGTTCGCGAGCTTAGGGACATGAGAGATAGTATAGGAAACTCGTCGAGAAGGAGAGCAGAGGGGAAGCACACGAACCGTCGTGGAAGATCGCATATAGCCCCTGAAGGGTCTCCATCTTCATCTGCACTCTTTCAACAACAAAGTCAGTGGGCTAACATGCCTCCCGAATTGCTTCTTGATATAATCCAGAGGGTGGAAGCCGCCGAGGCTTCATGGCCTGCCCGTCGGGATGTTGTTTCTTGTGGATCAGTTTGTAGGTCATGGCGGGATATCACCAAAGAGATAGTCAAGACTCCCGAGCAATGTGGTTGCCTCACGTTCCCTATTTCATTGAAGCAGCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCGACTTCAACTTTCCGATTGTATCTTGGTCTGAGCCCTGCCCTATCGGGGGATGCCAGTAAATTATTATTGGCTGCCAGAAAGATCAGAAGGGCGACGAGCACGGAGTTTGTGATATCCTTGCTTGGGGACGATTTCTCTCGAGCAACCAATGCATATGTTGGAAAATTAAAGTCTAATTTTCTGGGTACTAAATTCACCATCTACGACAGTCAGCCGCCACATGACCCTGCAGTCCATGGTAACTATAATGTGGCCACCATATCTTATGAGCTCAACGTTCTGCGTACCAGAGGCCCTAGGAGAATGCACTGCACCATGCATTGGATCCCCATCTCTGCAATTCAGGAAGGTGGCACCGCCCCAACTCCAATGACATTTGCAAAATGCCAAAAGGATCAATTTCCTCAAAATCCACTGGTTTTGAAAAATAAAGCTCCTAGATGGCATGAGCAGCTGCAATGCTGGTGCCTGAATTTCAAAGGACGTGTTACAGTGGCCTCCGTAAAAAATTTCCAGCTGGTGGCAGCTGTGGAGCCTTGCCAAAATGTCTCTGTGGCAGAGCAAGAAAAAGTAATACTACAGTTTGGAAAGATTGGGAAAGACATATTCACCATGGATTATCGATACCCCCTCTCTGCCTTCCAAGCATTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCAGCCTGTGAATGA | 1104 | 47.28 | MHFKSIVRELRDMRDSIGNSSRRRAEGKHTNRRGRSHIAPEGSPSSSALFQQQSQWANMPPELLLDIIQRVEAAEASWPARRDVVSCGSVCRSWRDITKEIVKTPEQCGCLTFPISLKQPGPRESQIQCFIKRERATSTFRLYLGLSPALSGDASKLLLAARKIRRATSTEFVISLLGDDFSRATNAYVGKLKSNFLGTKFTIYDSQPPHDPAVHGNYNVATISYELNVLRTRGPRRMHCTMHWIPISAIQEGGTAPTPMTFAKCQKDQFPQNPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCQNVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10827794 | 10830770 | - | Vvi18g960 | Vvi18g960 | 780663 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g960 | 367 | Pfam | F-box domain | 56 | 103 | IPR001810 | GO:0005515 | |
Vvi18g960 | 367 | MobiDBLite | consensus disorder prediction | 14 | 51 | - | - | |
Vvi18g960 | 367 | Pfam | Tub family | 117 | 362 | IPR000007 | - | |
Vvi18g960 | 367 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 367 | IPR025659 | - | |
Vvi18g960 | 367 | Gene3D | - | 51 | 102 | - | - | |
Vvi18g960 | 367 | ProSitePatterns | Tub family signature 1. | 295 | 308 | IPR018066 | - | |
Vvi18g960 | 367 | SUPERFAMILY | F-box domain | 52 | 99 | IPR036047 | GO:0005515 | |
Vvi18g960 | 367 | PANTHER | TUBBY-RELATED | 215 | 268 | - | - | |
Vvi18g960 | 367 | PANTHER | TUBBY-RELATED | 267 | 367 | - | - | |
Vvi18g960 | 367 | PANTHER | TUBBY-RELATED | 1 | 212 | - | - | |
Vvi18g960 | 367 | Gene3D | Tubby Protein; Chain A | 114 | 367 | IPR025659 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 172 | 188 | IPR000007 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 188 | 212 | IPR000007 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 217 | 244 | IPR000007 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 277 | 294 | IPR000007 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 295 | 311 | IPR000007 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 324 | 343 | IPR000007 | - | |
Vvi18g960 | 367 | PRINTS | Tubby superfamily signature | 345 | 367 | IPR000007 | - | |
Vvi18g960 | 367 | ProSitePatterns | Tub family signature 2. | 352 | 367 | IPR018066 | - | |
Vvi18g960 | 367 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 212 | - | - | |
Vvi18g960 | 367 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 215 | 268 | - | - | |
Vvi18g960 | 367 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 267 | 367 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14377 | PF01167 | Tub | 2.60E-98 | CL0395 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g960 | K19600 | - | vvi:100253937 | 719.924 |