Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g960 ATGCATTTTAAAAGCATTGTTCGCGAGCTTAGGGACATGAGAGATAGTATAGGAAACTCGTCGAGAAGGAGAGCAGAGGGGAAGCACACGAACCGTCGTGGAAGATCGCATATAGCCCCTGAAGGGTCTCCATCTTCATCTGCACTCTTTCAACAACAAAGTCAGTGGGCTAACATGCCTCCCGAATTGCTTCTTGATATAATCCAGAGGGTGGAAGCCGCCGAGGCTTCATGGCCTGCCCGTCGGGATGTTGTTTCTTGTGGATCAGTTTGTAGGTCATGGCGGGATATCACCAAAGAGATAGTCAAGACTCCCGAGCAATGTGGTTGCCTCACGTTCCCTATTTCATTGAAGCAGCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCGACTTCAACTTTCCGATTGTATCTTGGTCTGAGCCCTGCCCTATCGGGGGATGCCAGTAAATTATTATTGGCTGCCAGAAAGATCAGAAGGGCGACGAGCACGGAGTTTGTGATATCCTTGCTTGGGGACGATTTCTCTCGAGCAACCAATGCATATGTTGGAAAATTAAAGTCTAATTTTCTGGGTACTAAATTCACCATCTACGACAGTCAGCCGCCACATGACCCTGCAGTCCATGGTAACTATAATGTGGCCACCATATCTTATGAGCTCAACGTTCTGCGTACCAGAGGCCCTAGGAGAATGCACTGCACCATGCATTGGATCCCCATCTCTGCAATTCAGGAAGGTGGCACCGCCCCAACTCCAATGACATTTGCAAAATGCCAAAAGGATCAATTTCCTCAAAATCCACTGGTTTTGAAAAATAAAGCTCCTAGATGGCATGAGCAGCTGCAATGCTGGTGCCTGAATTTCAAAGGACGTGTTACAGTGGCCTCCGTAAAAAATTTCCAGCTGGTGGCAGCTGTGGAGCCTTGCCAAAATGTCTCTGTGGCAGAGCAAGAAAAAGTAATACTACAGTTTGGAAAGATTGGGAAAGACATATTCACCATGGATTATCGATACCCCCTCTCTGCCTTCCAAGCATTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCAGCCTGTGAATGA 1104 47.28 MHFKSIVRELRDMRDSIGNSSRRRAEGKHTNRRGRSHIAPEGSPSSSALFQQQSQWANMPPELLLDIIQRVEAAEASWPARRDVVSCGSVCRSWRDITKEIVKTPEQCGCLTFPISLKQPGPRESQIQCFIKRERATSTFRLYLGLSPALSGDASKLLLAARKIRRATSTEFVISLLGDDFSRATNAYVGKLKSNFLGTKFTIYDSQPPHDPAVHGNYNVATISYELNVLRTRGPRRMHCTMHWIPISAIQEGGTAPTPMTFAKCQKDQFPQNPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCQNVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10827794 10830770 - Vvi18g960 Vvi18g960 780663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g960 367 Pfam F-box domain 56 103 IPR001810 GO:0005515
Vvi18g960 367 MobiDBLite consensus disorder prediction 14 51 - -
Vvi18g960 367 Pfam Tub family 117 362 IPR000007 -
Vvi18g960 367 SUPERFAMILY Tubby C-terminal domain-like 105 367 IPR025659 -
Vvi18g960 367 Gene3D - 51 102 - -
Vvi18g960 367 ProSitePatterns Tub family signature 1. 295 308 IPR018066 -
Vvi18g960 367 SUPERFAMILY F-box domain 52 99 IPR036047 GO:0005515
Vvi18g960 367 PANTHER TUBBY-RELATED 215 268 - -
Vvi18g960 367 PANTHER TUBBY-RELATED 267 367 - -
Vvi18g960 367 PANTHER TUBBY-RELATED 1 212 - -
Vvi18g960 367 Gene3D Tubby Protein; Chain A 114 367 IPR025659 -
Vvi18g960 367 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Vvi18g960 367 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Vvi18g960 367 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Vvi18g960 367 PRINTS Tubby superfamily signature 277 294 IPR000007 -
Vvi18g960 367 PRINTS Tubby superfamily signature 295 311 IPR000007 -
Vvi18g960 367 PRINTS Tubby superfamily signature 324 343 IPR000007 -
Vvi18g960 367 PRINTS Tubby superfamily signature 345 367 IPR000007 -
Vvi18g960 367 ProSitePatterns Tub family signature 2. 352 367 IPR018066 -
Vvi18g960 367 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 212 - -
Vvi18g960 367 PANTHER TUBBY-LIKE F-BOX PROTEIN 215 268 - -
Vvi18g960 367 PANTHER TUBBY-LIKE F-BOX PROTEIN 267 367 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g987 Vvi18g960 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14377 PF01167 Tub 2.60E-98 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g960 K19600 - vvi:100253937 719.924