Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g961 ATGGAGACGCCTTTTATTTTAAGGAGAATAGGCTCGTCCGTCGTCCTGTCAAAGTCGTTAATAGGCCGTCAAGTCAGACGGAAATCGTCGTATTCCAAGTGGACCCGCATTGGGAAACTACCTGGAAGGCAGTGCACAGTCACACAATGCAACATGGACCCCACGTCATTTATGGATCTCCAGCTTCAAGCTTTGATTGTGTACTCTACTTTTTCATTGATACTAATTAATAAACTTGCAGAGGTTTTGGCAACAATGAACGTTCAAGTTTATTTCACGGTCATCTTTTTGGTGGCTTTGTCTTCCTCCCGGTTGAGTATGGTTGGAGCGTCCCCCGGATCGTTGTCAACGGCGATTCTGATGAGGGTTGATCAGTCGGGTAAGGGAGATTATCAAAAAATACAAGATGCAATTGATGCCGTACCGTCTAACAACACAGAGGTTGTGTTCATATGGGTTAAGCCTGGAATCTACAGAGAAAAGATTGTAGTACCGGCCGACAAGCCCTTCATAACGTTAAGTGGCACAAAAGCAACTACCACAATAATAACATGGAACGATACTGGCGAGATATTTGACTCCCCAACATTTTCTGTACTGGCTACTGATTTTGTGGGACGATTTCTCACTATTCAGAACACATATGGGGCTGGTGCAAAGGCAGTTGCATTGAGGGTGTCAGCAGATAGGGTGGCATTCTTTGAGTGCAGGATTCTTTCTCATCAAGATACCCTTCTGGATGACACTGGCAGGCACTTCTACCGCAACTGTTTTATCCAGGGAGACACAGACTTCATTTGTGGAAATGCTGCTTCTCTTTTTGAGAAATGTCATTTGCATTCACTTTCGGAAGAAAGCGGGGCTATCACAGCCCAGCGCCGGGAGTCGCCAGCAGAGGACACAGGCTTCATCTTCTTGGGCTGCAAACTTACCGGCCTCAAAAGTGCCTTACTAGGACGGCCATGGGGTGATTATTCAAGAGTTGTTTTTGCCTTCACTTACATGTCTAATGCGATACTGCCTCAGGGATGGGATGATTGGAGCGACACTTCCAAGCAAAGTACGGCGTTCTACGGGCAATACAAGTGCTACGGGCCAGGAGCCATAACTTCTAAAAGGGTTGAATGGTCACGCAATCTCACAAGCCAGGAAGCTGCGCCCTTCTTGACTAAGAACTTGATTGGTGGCAACAGTTGGATCAGGCCTGCCCCAACCCACTTCAAGAGAGCTTCTACCTCCATCTCTAACAATGCTAATGGAAATACCTAA 1269 46.57 METPFILRRIGSSVVLSKSLIGRQVRRKSSYSKWTRIGKLPGRQCTVTQCNMDPTSFMDLQLQALIVYSTFSLILINKLAEVLATMNVQVYFTVIFLVALSSSRLSMVGASPGSLSTAILMRVDQSGKGDYQKIQDAIDAVPSNNTEVVFIWVKPGIYREKIVVPADKPFITLSGTKATTTIITWNDTGEIFDSPTFSVLATDFVGRFLTIQNTYGAGAKAVALRVSADRVAFFECRILSHQDTLLDDTGRHFYRNCFIQGDTDFICGNAASLFEKCHLHSLSEESGAITAQRRESPAEDTGFIFLGCKLTGLKSALLGRPWGDYSRVVFAFTYMSNAILPQGWDDWSDTSKQSTAFYGQYKCYGPGAITSKRVEWSRNLTSQEAAPFLTKNLIGGNSWIRPAPTHFKRASTSISNNANGNT* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10831632 10837616 + Vvi18g961 Vvi18g961 780664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g961 422 Gene3D - 118 410 IPR012334 -
Vvi18g961 422 Pfam Pectinesterase 123 397 IPR000070 GO:0030599|GO:0042545
Vvi18g961 422 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 96 402 - -
Vvi18g961 422 PANTHER PECTINESTERASE 11-RELATED 96 402 - -
Vvi18g961 422 SUPERFAMILY Pectin lyase-like 118 407 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g961 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - vvi:100255758 684.871
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g375 Vvi18g961 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51