Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g963 ATGGCCGAGAAAAGCAAGATTCTGATCATCGGAGGAACAGGGTACATCGGAAAGTTCGTGGTCCAAGCCAGTGCAAAATCCGGCCATCCCACCTTCGCTCTCGTCAGAGAAAGCACAATTGCCGATCCTGTTAAGGGAAAACTCATCCAGGAGTTCAAGAACTCCGGCGTCACCTTGCTCCACGGAGACTTGTACGACCACGATAGCTTGGTGAAGGCGATAAAGCAAGTGGATGTGGTGATATCTACAGTAGGATTCATGCAGTTAGCTGATCAGGTGAAGATCATTGCTGCCATCAAGGAAGCCGGGAATGTTAAGAGATTCTTACCTTCAGAATTTGGAAACGATGTGGATCGTGTTAATGCGGTTGAACCAGCAAAATCCGCGTTTGCAGCAAAGGTTCAAATGCGCAGGGCCATCGAGGCTGAAGGGATTCCCTACACCTTTGTAGTGGCCAACTGCTTTGCAGGCTATTTTCTCCCTACATTGGTCCAGCCAGGCGTTTCTGCTCCTCCCAGAGACAAAGTCATCATATTAGGGGACGGAAATCCAAAGGCATGCTTTAACAGGGAAGATGATATTGGAACCTACACCATCAAAGCTGTGGATGACCCAAGGACATTGAACAAGATCCTCTACATCAAACCTCCCAACAGCACACTCTCATTTAATGAGCTTGTTTCCTTATGGGAGAGTAAGATTGGCAAAACCCTTGAAAAGGTTTATGTTCCAGAGGAGCAAGTTCTGAAGGACATTCAAGAGGCCCCAATGCCGATTAATGTTTTCTTATCGATCCAGCACTCTGTTTTTGTGAACGGAGACCAAACTAACTTTGAGATAGAGCCCTCTTTCGGGGTGGAAGCTTCTGAGCTTTATCCTGACGTCAAATACTGCACTGTGGATGAATATCTCAGTGCGTTTGTCTGA 927 46.93 MAEKSKILIIGGTGYIGKFVVQASAKSGHPTFALVRESTIADPVKGKLIQEFKNSGVTLLHGDLYDHDSLVKAIKQVDVVISTVGFMQLADQVKIIAAIKEAGNVKRFLPSEFGNDVDRVNAVEPAKSAFAAKVQMRRAIEAEGIPYTFVVANCFAGYFLPTLVQPGVSAPPRDKVIILGDGNPKACFNREDDIGTYTIKAVDDPRTLNKILYIKPPNSTLSFNELVSLWESKIGKTLEKVYVPEEQVLKDIQEAPMPINVFLSIQHSVFVNGDQTNFEIEPSFGVEASELYPDVKYCTVDEYLSAFV* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10844297 10846184 + Vvi18g963 Vvi18g963 780666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g963 308 Gene3D - 154 304 - -
Vvi18g963 308 Pfam NmrA-like family 7 243 IPR008030 -
Vvi18g963 308 PANTHER ISOFLAVONE REDUCTASE HOMOLOG P3-RELATED 2 308 - -
Vvi18g963 308 Gene3D - 6 294 - -
Vvi18g963 308 PANTHER PINORESINOL REDUCTASE-RELATED 2 308 - -
Vvi18g963 308 CDD PCBER_SDR_a 6 303 IPR045312 GO:0016491
Vvi18g963 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 274 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g963 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - vvi:100264250 605.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g371 Vvi18g963 ECH
Vvi3g368 Vvi18g963 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00792 . . . . . . Bma05g00127 . . . . . . . . . . . . . . . . Cla11g00408 Cam11g0454 Cec11g0450 Cco11g0441 Clacu11g0579 Cmu11g0437 Cre11g0918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234