Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g969 ATGGCGCGTTCTATGTACAGAAACCAGGCGTCCTCTGCCACTTTCTCCAAGAAACTCTCCACCGCAAATGGATTCTACGACGACGTTTTTTCCGGTCAGGCGAAGGTCGGAGCTCCAACTTTCTCGTCTCGAGTTGAGGACTACTGTGAAATTTTTGGCACCTCTCAGGCTTCGCGTGGTTCCTCGATTCCGGTTCTAGATCTTCCGATTGCCAATGAACGAGAAGCTCCTATTGATGTTCGAAGCTCGAAATTCGACTACTCGAAAATTTTCAGCGGTTTAGGCGATGTGGATTTTGCGGCACCGTCGTATGAGGAATTGTTCGCTGAACCAAAGGAAGGCGATAGTACTTCCTCCATGGAAGCGTGGACTCCAGCTGAAACAGGTTCTCCTTCAGAAGCTTCAGATGTTTTTAATAGCTCAGAAGAAAATGAAGTATATGAAGCAGCTTACCAATCATTTGATTCTGTAAAGCAGTTCAACATGTCATATCACAGAACCAATCAAAGAAGTCCTGAAAGCACAAACGAAACAACACACATAGCTCAATTCCATGCTGTTCCTGGATATTCTTGTTTAATTGATGAATTCTCTCCTTTACAAAAGACTGAAAGTGATACACCAGTACCTACAATAGTAAATGATGTTAAGCTTAATGTGGATTTTAGTGAGGGGACAAAGGAAAGAAAACATTGCAAGACAGCCTTGTCACATCCTCCACCCTGTGATGATGAGAAACAGGCTTCTGATGGTGATGCCAATTTTCGAAGCGGATTTGATCGAAACCAGTCTTATTCTAATGATAATTTATTTAGTGCATATGAAACTAGAATTCATTCCTCTAAACTGCAGCCACCTAACCCAAACAAGAAAGAAGATGATTACAATAAATCAATGGATTCAAACTTCAAAGCTTCTACAAGTGCTCCTGGAGGTGCAGCAGATGATTGTTCATCAACTTCCTCTGATGAGGAAATAGATCCAAATTCTGCTGCCGCTGCCTCTGCTGCTGCTGTGAGAAAAGCAATAGAGAATGCTCGAGCAAGGATCAGAATAGCAAGAGAATCAATGGAGAGAAAGAAGGCTGGCCTTCAAAGTAGTGGGAAATTGAGCTTTAAGGATGGCTTGGAATTCAAAGAAAAAAGGGGTGGTAAAGTTCCTGCTTCAGGAAGCAGATACAAAGAGAAGGTGACACAAATAACATGTGAAAGAGTTGATAGAACAGTGCCAGTTTTTGCAGGGAGAGAGAGACAAAATGCAACAGAAACAGGACAAGTAGTTCCAGGTGCCAAAAGCAGAGAGAAAGTTATTATTGCTAACAAAACTGCAGAAGCAATGCATGGGACGAATTCCCAACAAACTCAAGTGGATCATGGGCAGGAAGGAGCAGATGAATTGGAAGCAGCCAAACTGTTTTATGATCAAGTAAATACACACAAGTCCAGAGCAGCAACCTTGGTCTTCAAGCATGCAGATGGTGAGAACAAAATGATCGAAGCTATTGATGCACGTGAATGGAAAGAGAAGGTGATGGTTAAGACAAACTCGGATGAGCCCACAGAAAATGCAAAGAAGATGAAAATTATTGAAGAGGCTCATAAATGGGAGGAAATTGGGAACGCTATAAAAGGGGCACAAGAGTGGGATGCAAATAAGTTAGAAGCAGCCACAGAGCTTACTGAGCAGGAAGAAAATGAGAAGAAATTGAGAATTGGTGTAGAGTTGCGAGAAACCAAGGAGATAGAAAATGAGGAAGAACTGAAAAAGTGTCAGCAGCCAATAAAAAGAGAGGGAATCGATATTCAAGGGTGGGAAGAAACTGAGGAAATAGAAAATGAGGAGGAACTGAAAGAGTGTCAGCAGCCCATAAAAAATGAGGAGGAAATTGATCTTCAAAATTGGGAGGAGGACGAAACTCTTCAGAAGAGACTAGAAGAGGGGGGTCCAAAGCAGATAGAAAATGAAGAGCAAAAAGAGTCCTATGAACAAGCAGAAAATGAGAGGAAAGTAAGTGAAGTTTGTGGGTGGGTAGAACATGAGGAGCAACCAGGAGAGGTTTGTGGGCAGGAAGAAAATGTGAAGAAACACAAAGATGCCCCCAAGGGAGACAGCGAGAAAGAGTTGGCCAAGGTTTGTGAGAAAGAAACGAGACTAAATGTCCCTCATGACTGGGAAGAAAGTGAGAAGCTACTGAAAGAGGATCATCTGTGGGAAGGAAACGAGAACCTTGAAGAGACCCAAAAGCTGGAAGTGAATGAAGAGATGCTAAAAGAGTCTTATCAGATGGGAGAAAATGAGAAGAGTCAAAAAGAAGCTCATGAATGGGAAGAAACTGAGAGAACACAGGGAGAGACTGATGAGATAGAAGAAAATGGGCAGAGAAAAGTGACTAAAGAGGCTATCAAGTATGATGGGGAGAAGAATCTTGAGGCCACTAATAATGCCTCTGAGCAGGATCAAGCTAAGAACCTAAGTGGGACTCAAGAAGCCTGTACACAGAAGGGAAATGATATGGATATGGATGTAATAGAAGAAGTATTTGCTGATGAGGAGAATGGGAGGATGATGGAAGTATATGAATCTTTCTGTGAACCCAAAGAGAATGGAAATGGGTTGAAACCTTTTAAAGTGGAAAATGATCTGGAGGAAAGAGAGATGTTTGAAGAAGCAAGATTGACTCTGGATGCCCTCAAAAACAGAGAGATCAAGAACAGCATGAATGATGAAGTTGAAACATTCTTTTTAGATGCCAATGAGGTGGATTTAGATGAAATTGACATGAATCTCGGACAAGAAGAAACTGACCACAATACAGAACCTGAATTAGCCTGCAATCTGGAAGAGCATTTTAAGAAACTAGCTCCTGAATCAGGAGAAAATAATAAGCATGTAAATGAGACTGAAGTTGCCTTGGATGAGGAAGAAGATGATGTGTCTTATGGGGAAAGACAATGGGTTGAGAATGGGAAGAAAATGGAGGCAGGTTGTGTGTTTGAAGGGAAAGAAATGAACATGGAAATGGATCAGGAGATCAATTCAAGCCAAATTACAGAAGGAAATAAGGAGAATGCACAAGATACCTTCACAATTGAAGGGAGGGAAACCAAGGAAACTTTGCAAAAGGAAGCAGAGGTGGAAAAGGAACACTTTAGAAGAACAAATGAAGCGAAAGAGAGGGAAAGAGAAAGAGAAAAAGAAAGAATAGCTGTTGAAAGAGCAATCCGTGAAGTTCGTGAAAGGGCATTTGCTGAAGCCCGAGAAAAGGCAGAAAAGGCTGCTGCAGAAAGAGCAACTGCTGGAGCCCGACAAAAAGTGATGGCTGGGGCTGGGGAAAGATTGAATAAAGCTTCTTCAGGGGCTAAATCATCAGCTGAGAAGGCTTCTATGGAAGCCAAACTTAGGGCAGAACGTGCTGCTGTAGAGAGAGCAACTGCAGAGGCTCGGGAGCGTGCCCTGGAAAAAGCACTATCTGGGAAGGCTGCCTCTGGAGCAAGAGAACAGCCCGAAAGGTTTGCTGCTGCTAAGAAGGATCCACTGTATCAAGGCTCAGGTCCTTCTAGCAATTCAAGATATTCGAATTCTTCAAATCATGGTGTTCCTTATGCCACTGGATTTGATGAGGCCAAAGATGAAGCAACTCAGAGGTGTAAAGCTATGTCAGATAGACATCAACGGACAGTGGAGCGTGTGGCAAAAGTTCTTGAGGAGAAGAATATGCGGGATCTACTTGCTCAGAAAGAGCAAGCAGAGAGAAACAGACTAGCAGAAGCTCTAGATGGTGGTGTCAAAAGGTGGTCAAGTGGGAAGGAGGGGAACTTGCGTGCACTGCTTGCAACGCTTCAATATATTCTTGGGCCTGATAGTGGTTGGCAGCCGATTCCCCTAACAGATATAATAACAACCAATGCTATAAAGAAAGCTTACCGGAAGGCCACTCTTTGTGTGCATCCTGATAAGTTGCAGCAGCGTGGTGCTAGCATTCAGCAGAAGTACATATGTGAGAAGGTTTTTGATCTTTTACAGGAGGCTTGGAACAAGTTCAACTCAGAGGAGTGA 4056 42.87 MARSMYRNQASSATFSKKLSTANGFYDDVFSGQAKVGAPTFSSRVEDYCEIFGTSQASRGSSIPVLDLPIANEREAPIDVRSSKFDYSKIFSGLGDVDFAAPSYEELFAEPKEGDSTSSMEAWTPAETGSPSEASDVFNSSEENEVYEAAYQSFDSVKQFNMSYHRTNQRSPESTNETTHIAQFHAVPGYSCLIDEFSPLQKTESDTPVPTIVNDVKLNVDFSEGTKERKHCKTALSHPPPCDDEKQASDGDANFRSGFDRNQSYSNDNLFSAYETRIHSSKLQPPNPNKKEDDYNKSMDSNFKASTSAPGGAADDCSSTSSDEEIDPNSAAAASAAAVRKAIENARARIRIARESMERKKAGLQSSGKLSFKDGLEFKEKRGGKVPASGSRYKEKVTQITCERVDRTVPVFAGRERQNATETGQVVPGAKSREKVIIANKTAEAMHGTNSQQTQVDHGQEGADELEAAKLFYDQVNTHKSRAATLVFKHADGENKMIEAIDAREWKEKVMVKTNSDEPTENAKKMKIIEEAHKWEEIGNAIKGAQEWDANKLEAATELTEQEENEKKLRIGVELRETKEIENEEELKKCQQPIKREGIDIQGWEETEEIENEEELKECQQPIKNEEEIDLQNWEEDETLQKRLEEGGPKQIENEEQKESYEQAENERKVSEVCGWVEHEEQPGEVCGQEENVKKHKDAPKGDSEKELAKVCEKETRLNVPHDWEESEKLLKEDHLWEGNENLEETQKLEVNEEMLKESYQMGENEKSQKEAHEWEETERTQGETDEIEENGQRKVTKEAIKYDGEKNLEATNNASEQDQAKNLSGTQEACTQKGNDMDMDVIEEVFADEENGRMMEVYESFCEPKENGNGLKPFKVENDLEEREMFEEARLTLDALKNREIKNSMNDEVETFFLDANEVDLDEIDMNLGQEETDHNTEPELACNLEEHFKKLAPESGENNKHVNETEVALDEEEDDVSYGERQWVENGKKMEAGCVFEGKEMNMEMDQEINSSQITEGNKENAQDTFTIEGRETKETLQKEAEVEKEHFRRTNEAKEREREREKERIAVERAIREVRERAFAEAREKAEKAAAERATAGARQKVMAGAGERLNKASSGAKSSAEKASMEAKLRAERAAVERATAEARERALEKALSGKAASGAREQPERFAAAKKDPLYQGSGPSSNSRYSNSSNHGVPYATGFDEAKDEATQRCKAMSDRHQRTVERVAKVLEEKNMRDLLAQKEQAERNRLAEALDGGVKRWSSGKEGNLRALLATLQYILGPDSGWQPIPLTDIITTNAIKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLQEAWNKFNSEE* 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10882083 10891128 + Vvi18g969 Vvi18g969 780672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g969 1351 PANTHER AUXILIN-LIKE PROTEIN 1 9 1351 - -
Vvi18g969 1351 Coils Coil 1232 1252 - -
Vvi18g969 1351 Coils Coil 336 360 - -
Vvi18g969 1351 Coils Coil 545 565 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 111 137 - -
Vvi18g969 1351 Coils Coil 1040 1076 - -
Vvi18g969 1351 CDD DnaJ 1300 1345 IPR001623 -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 231 262 - -
Vvi18g969 1351 SUPERFAMILY Chaperone J-domain 1198 1350 IPR036869 -
Vvi18g969 1351 Coils Coil 1126 1155 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 231 251 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 1127 1155 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 738 838 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 1014 1065 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 605 669 - -
Vvi18g969 1351 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 9 1351 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 1084 1203 - -
Vvi18g969 1351 Gene3D DnaJ domain 1224 1351 IPR036869 -
Vvi18g969 1351 ProSiteProfiles dnaJ domain profile. 1288 1351 IPR001623 -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 616 669 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 1027 1065 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 117 137 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 809 834 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 1181 1200 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 682 725 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 278 332 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 300 328 - -
Vvi18g969 1351 MobiDBLite consensus disorder prediction 738 806 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g969 - - - vvi:100266034 2489.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g999 Vvi18g969 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006624 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 2 2 38