Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g970 ATGGCCGCCATTACTTCTCACTGTGCTCTGCGATCAGACTGTGCTCCCTTCTCCTCCTCCTCTTCGTCTTTCTCCGGCCAGGCTTTTCGCCAACCTGCTCCTTTTCCCGGCATTTCCTTGTCTTCCTCGGCAATTTCTCCGACACTCCGCCGCCGCATCTCTTGTCAGACATCCTCTGCGATTTCACCTTCATCTGCCGTCAATGTAAAAGAAAAATCAGGGCTCAAGGATTTTCTTCACATTAATGATTTTGACAAAACTACTATTTTGAAGATCCTAGATCGTGCCTTGGAGGTCAAGGCACTGCTAAAGTCAGGAGAAAGGACATTTCTCCCATTTAAAGGGAAGACAATGGCAATGATATTTGCAAAGCCGTCCATGAGAACACGGGTTTCATTTGAGACTGGATTTTTCTTGCTTGGAGGTCATGCTTTATATCTAGGACCAGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTGACAGACTACAATCATCCCTGCCAAATAATGGCTGATGCCCTCACAATAATTGAACACATTGGTCAGTTGGAAGGAACTAAGGTTGTCTATGTTGGGGATGGGAACAACATTGTGCATTCCTGGCTGCTGCTGGCTGCAGTTGTTCCCTTCCATTTTGTCTGTGCCTGTCCTAAAGGTTTTGAACCAGATGAGAAAACGGTTCAGAAGGCACAACAGGCTGGAATTAGCAAGATTGAGATAACAAATGATCCAAAAGAAGCTGTTAGAGGAGCAGATGTTGTATACTCAGATGTTTGGGCTAGCATGGGGCAAAAGGAAGAGGCCTCATATCGCCGGCAAGTGTTTCAAGGATTTCAGGTGGATGAACCCCTTATGAAGTTAGCCGGGCCAAAAGCCTATTTCATGCATTGTTTACCGGCTGAAAGAGGCGTGGAGGTGACTGATGGGGTTCTTGAAGCGCCAAATTCCATTGTCTTCCCACAAGCAGAGAACCGCATGCATGCACAGAATGCCATAATGCTTCATGTGCTTGGCTTGTGA 1137 46.09 MAAITSHCALRSDCAPFSSSSSSFSGQAFRQPAPFPGISLSSSAISPTLRRRISCQTSSAISPSSAVNVKEKSGLKDFLHINDFDKTTILKILDRALEVKALLKSGERTFLPFKGKTMAMIFAKPSMRTRVSFETGFFLLGGHALYLGPDDIQMGKREETRDVARVLSCYNDIIMARVFAHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIVHSWLLLAAVVPFHFVCACPKGFEPDEKTVQKAQQAGISKIEITNDPKEAVRGADVVYSDVWASMGQKEEASYRRQVFQGFQVDEPLMKLAGPKAYFMHCLPAERGVEVTDGVLEAPNSIVFPQAENRMHAQNAIMLHVLGL* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10891148 10903368 - Vvi18g970 Vvi18g970 780673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g970 378 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 76 376 IPR002292 GO:0016743
Vvi18g970 378 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 75 377 IPR024904 GO:0004585|GO:0006591
Vvi18g970 378 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 1 378 - -
Vvi18g970 378 Gene3D Aspartate/ornithine carbamoyltransferase 78 372 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 75 377 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 Gene3D Aspartate/ornithine carbamoyltransferase 207 363 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 76 217 IPR006132 GO:0006520|GO:0016743
Vvi18g970 378 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 223 374 IPR006131 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 122 141 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 204 215 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 329 338 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 341 364 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi18g970 378 PRINTS Ornithine carbamoyltransferase signature 120 134 IPR002292 GO:0016743
Vvi18g970 378 PRINTS Ornithine carbamoyltransferase signature 153 166 IPR002292 GO:0016743
Vvi18g970 378 PRINTS Ornithine carbamoyltransferase signature 193 207 IPR002292 GO:0016743
Vvi18g970 378 PRINTS Ornithine carbamoyltransferase signature 293 303 IPR002292 GO:0016743
Vvi18g970 378 PRINTS Ornithine carbamoyltransferase signature 355 366 IPR002292 GO:0016743
Vvi18g970 378 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 1 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g970 K00611 OTC, argF, argI; ornithine carbamoyltransferase [EC:2.1.3.3] - vvi:100243725 749.969
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g970 Blo01g01571 . Bda01g00522 . Bpe02g00382 . . Bma01g02329 . . Cma01g01919 Cma09g00147 Car01g01500 . . Cpe06g00103 . . . . . . . . . . . . . . . . . . Cone20ag0133 Lsi04g01689 Csa03g04229 Chy04g00486 . . . . . . . . . . Cmo01g01982 Cmo09g00145 . . . Car09g00131 . Cpe02g00117 . . . . . . . Cla05g01923 Cam05g2060 Cec05g2073 Cco05g2124 Clacu05g2054 Cmu05g1931 Cre05g2054 . . . Cme04g00545
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 35