Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g974 ATGGAAGGAGGTGAGAAGGGCACCGTTTGCGTCACGGGCGCCTCGGGATTCATAGGATCATGGCTGGTTATGAAGCTTCTCCAACGAGGCTACTATGTTCATGCAACCGTACGCGATCCTGGCAACGTGGAGAAGGTGAAGCATCTTTTAGAGTTGCCCAAAGCCAGCACACACCTGAGCTTGTGGAGAGCAGACCTGAAGGAAGAGGGAAGTTTTGACGATGCTATTCAGGGATGTATTGGAGTCTTCCACGTGGCTTCCCCTATGGACATATCGACTCAGGATGCCCAGAATGAAGTGATAGATCCAACAGTGAATGGGGTTTTAGACATCATGAGAGCCTGCACCAAGGCCAAGACCGTCAAGCGGTTCATCTATACTTCAACCACTGGAACCATTACAGTTGGACCAGAACCACTCCCGCTTGAGTACGATGAAAGCTTTTGGACTGACGTCGACTACTGCAAGGCTCAGAAGATGACTGCGTGGATGTATTTTATTGCTAAAACAACAGCCGAGAAAGCTGCGTGGGAATTCGCCAAAGAGAAAGGCCTGGATGTTGTTACCATTCAACCCCCTGTTGTGGTGGGGCCATTTGTTACACCTTCCCTGCCTCCTAGCGCTAAACTTGTACTCGCGGTACTCACTGGAGAGGAAGCTGGCTGCAACTTGTTGGCTCGAGGACGAGCTGTGCATGTAGATGACCTATGTGATGCCCACATATACCTATTTGAACATCCAGAGGCAAAGGGACGGTACATTTGCTCTTCCCATTGTTTTAATATCATTGAGCTAGCAAGATCATTGAGCCTCAAGTACTCAGAGTACAATATCCCAACCAAATTTGAGGGTGTGGATGAATCCTTGAAATCTATCCCTTGTTCCTCTAGGAAACTATTGGACCTTGGCTACAAATTTAAGTACAACTCAGAGGAATACGACATTGGGGATCTGTGTTCTGGAGCCATTGAATCATGCAAAGAGAAGGGGCTGATGCCATCTCCTGGTGCTTTCCTCTTATTTCCATGGAAATTTCATGATTATATACTATGCTTGATAGGTTTTTTTAGGTTTAGATCTCAATTGTTGTTCATTTGCTATGATTTCGAAATCGGAATGAAAAACAGAGCAACAAAAATACTTGTGAGGGGGGATTTGATTACGGCAATGCAGAATAACCAAAGTGGAAGTGGGTGCGTACCTGATCAGCAAACGGCAACGCGCTATCACAAAATAGGGTTAGTGCATAGTAATGAACATAAAGTATGTCACTCATATCACCAAACAGAAAGAATCACCAATAGCACGCATGACATTCCATTCAAATCCATTTTTATTTTAAAGGAAATTTATTTGATATCGGGCCCCCACCAAAGCCCGTTTATTTTGCATGAATTAATTCCAGAAGGGAATGGGTCACCAGCCGACCGTAGCTCACCGTGGCAACTGGCCGATGGTGTCACCTATGGTGGTAAAAAAATAACAAAAATAAAAGAAGTTAGAGGGGAGGCGGGTAGCGAAGAAGGGAATGCGCAGGGGGCCATCACGATCTTCCATATTCTGATGATTTTGCCTCGTTGCATAAATGGGAAAGAACTAACCTTCTTCCTTCCTACAGTTCGTGAAATTGGATTTCTAGAAGTTGTGACGCTCGTGGAAGACTTCTTAACTAGCAAATTCGAAACTACAATCCTTAGAAAGAGTGAGCAGCAACAAAACAATTTGGGCCTTCCAATCTTTCTTGTTGCTTTCATTTTCTTCCCCGGATCATTTTTGAGAAGTATGGGTTCACAAAGTGAAACCGTGTGCGTCACCGGTGCCTCCGGTTTCATCGGTTCATGGCTGGTCATGAGGCTCCTGGAGCGCGGCTATACTGTTCGGGCCACCGTTCGCGATCCAACTAACGTGAAAAAAGTGAAGCATTTGCTGGACTTGCCCAAAGCGGAGACGCATCTGACTCTCTGGAAGGCAGATCTTGCTGATGAAGGAAGTTTCGATGAAGCTATTAAAGGCTGCACCGGCGTCTTCCATGTTGCCACACCCATGGATTTTGAATCGAAGGATCCTGAGAATGAAGTGATAAAGCCAACTATTGAAGGGATGTTGGGCATAATGAAATCGTGTGCTGCCGCAAAGACTGTCAGAAGGCTTGTATTCACATCCTCCGCAGGAACTGTGAACATTCAAGAACACCAACTGCCAGTGTACGATGAAAGCTGCTGGAGTGATATGGAATTTTGCCGGGCTAAAAAGATGACTGCATGGATGTACTTTGTCTCCAAGACACTGGCTGAGCAAGCTGCATGGAAGTATGCCAAGGAAAATAACATTGACTTCATCACTATCATACCGACTCTTGTGGTTGGCCCCTTCATAATGTCATCAATGCCTCCAAGCCTCATAACTGCTCTTTCCCCGATCACTGGAAACGAAGCTCATTATTCAATTATACGGCAGGGCCAATTTGTTCACCTGGATGACCTCTGCAATGCTCATATTTACTTGTTTGAGAATCCTAAGGCAGAGGGACGTTACATTTGCTCCTCCCACGATTGTATCATTCTCGATCTTGCAAAAATGCTTAGAGAAAAATACCCCGAGTATAATATCCCCACAGAGTTCAAAGGTGTTGATGAGAACTTGAAGAGTGTCTGTTTCTCCTCCAAGAAGCTGACAGATTTGGGGTTTGAGTTTAAATACAGCTTAGAGGACATGTTTACTGGAGCTGTGGACACATGCCGGGCCAAGGGATTGCTTCCCCCTTCACATGAGAAACCTGTAGATGGCAAGACCTAG 2796 45.53 MEGGEKGTVCVTGASGFIGSWLVMKLLQRGYYVHATVRDPGNVEKVKHLLELPKASTHLSLWRADLKEEGSFDDAIQGCIGVFHVASPMDISTQDAQNEVIDPTVNGVLDIMRACTKAKTVKRFIYTSTTGTITVGPEPLPLEYDESFWTDVDYCKAQKMTAWMYFIAKTTAEKAAWEFAKEKGLDVVTIQPPVVVGPFVTPSLPPSAKLVLAVLTGEEAGCNLLARGRAVHVDDLCDAHIYLFEHPEAKGRYICSSHCFNIIELARSLSLKYSEYNIPTKFEGVDESLKSIPCSSRKLLDLGYKFKYNSEEYDIGDLCSGAIESCKEKGLMPSPGAFLLFPWKFHDYILCLIGFFRFRSQLLFICYDFEIGMKNRATKILVRGDLITAMQNNQSGSGCVPDQQTATRYHKIGLVHSNEHKVCHSYHQTERITNSTHDIPFKSIFILKEIYLISGPHQSPFILHELIPEGNGSPADRSSPWQLADGVTYGGKKITKIKEVRGEAGSEEGNAQGAITIFHILMILPRCINGKELTFFLPTVREIGFLEVVTLVEDFLTSKFETTILRKSEQQQNNLGLPIFLVAFIFFPGSFLRSMGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLLPPSHEKPVDGKT* 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10907155 10924023 - Vvi18g974 Vvi18g974 780677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g974 931 CDD AR_like_SDR_e 602 894 - -
Vvi18g974 931 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 595 913 IPR036291 -
Vvi18g974 931 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 599 923 - -
Vvi18g974 931 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 337 - -
Vvi18g974 931 CDD FR_SDR_e 9 303 - -
Vvi18g974 931 PANTHER DIHYDROFLAVONOL 4-REDUCTASE-LIKE 599 923 - -
Vvi18g974 931 PANTHER DIHYDROFLAVONOL 4-REDUCTASE-LIKE 4 337 - -
Vvi18g974 931 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 313 IPR036291 -
Vvi18g974 931 Pfam NAD dependent epimerase/dehydratase family 602 841 IPR001509 -
Vvi18g974 931 Pfam NAD dependent epimerase/dehydratase family 9 251 IPR001509 -
Vvi18g974 931 Gene3D - 595 931 - -
Vvi18g974 931 Gene3D - 3 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g974 K13082 DFR; bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [EC:1.1.1.219 1.1.1.234] - vvi:100233141 691.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1000 Vvi18g974 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00809 Bda08g01275 . . Bpe05g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001471 4 1 2 1 2 2 1 2 2 1 1 2 2 1 2 2 2 4 2 2 2 4 3 2 2 1 6 4 4 6 72