Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g983 ATGGAAGTGATGCAAGTACTCCATATGAACAAAGGGGCTGGGGAGACAAGTTACGCAACCAACTCCACAGTTCAGAGCAACATTATATCCACAGCGAAACCAGTGACGGAGGAAGCTATACTAGATATATTCAACAATGTCTTGCCTGAGAGCGTAGGCATTGCGGATTTGGGTTGCTCATCTGGACCCAACACCTTGTTGGTGGTGTCAGAGATACTGGACGTGATATATGCCAAATGGCAGCAGCTGGGTCGTCCTTGTTCGCCTGAGTTTAGGGTGTACTTGAATGATCTTATCGGCAATGACTTCAACAATGTGTTTGGCTCACTCCCTGCATTTTACAACAAACTCAAGGAAGAGAAAGGCTCCGAGTTTGGGCCATGTTTTATATCGGGTGTGCCTGGTTCATTTTACGGGAGGGTGTTCCCAAGCAAGAGTCTCCACTTCGTGCACTCTTCTTCCAGTCTCCACTGGCTCTCTCAGGTTCCACCGGGTCTAGAGAGCAAGGATGGGAGAGGGAGCTGGAACAAGGGAAAAATTTACATATCAAAGACGAGTCCAGATTGCGTTTTGGAGGCATACTCATCGCAGTTCCAGAAGGACTGGTCAGTGTTTCTCAAGTCACGTGCAGAAGAAATAGTGGGGGGAGGACGCATGGTGTTGTCCTTCATGGGCAGGAGATCCACAGACCCTCGTTCAAAAGAGAGTTGCTACCAGTGGGAGCTCTTAGCCCGAGCACTCATGAGCATGGTTTCGGAGGGTCTAATCGAAGAGAAAAAGGTTGATTCATTCGATGCTCCATACTATGCACCAAGTCCGGAAGAAGTGAAATTTGGAATATACAAAGAGGGGTCATTCATCTTAGATCGGCTGGAAATGTTTGAAATAGATTGGGATGGAGGTGATGGTGATAATTATGATGCAACTCCCACGTCCTCAACGCTATCAAATGGAGCACGAGTGGCTAAGACAATTAGAGTTGTGGTTGAGTCCATGCTAGCAAGCCATTTTGGAGGAGATGTAATGGATGGTTTATTTCAAAGGTACGGTGAGATGGTGGGCGATCACTTGGCAAAGACAAGGACTAAGTATATTAATTTGGTCATCTCCCTTGTAAGAAAAGTTTAA 1128 46.54 MEVMQVLHMNKGAGETSYATNSTVQSNIISTAKPVTEEAILDIFNNVLPESVGIADLGCSSGPNTLLVVSEILDVIYAKWQQLGRPCSPEFRVYLNDLIGNDFNNVFGSLPAFYNKLKEEKGSEFGPCFISGVPGSFYGRVFPSKSLHFVHSSSSLHWLSQVPPGLESKDGRGSWNKGKIYISKTSPDCVLEAYSSQFQKDWSVFLKSRAEEIVGGGRMVLSFMGRRSTDPRSKESCYQWELLARALMSMVSEGLIEEKKVDSFDAPYYAPSPEEVKFGIYKEGSFILDRLEMFEIDWDGGDGDNYDATPTSSTLSNGARVAKTIRVVVESMLASHFGGDVMDGLFQRYGEMVGDHLAKTRTKYINLVISLVRKV* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10999095 11003121 - Vvi18g983 Vvi18g983 780686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g983 375 Gene3D Vaccinia Virus protein VP39 21 361 IPR029063 -
Vvi18g983 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 374 IPR029063 -
Vvi18g983 375 Gene3D - 6 360 IPR042086 -
Vvi18g983 375 Pfam SAM dependent carboxyl methyltransferase 44 373 IPR005299 GO:0008168
Vvi18g983 375 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 4 372 IPR005299 GO:0008168
Vvi18g983 375 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 4 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g983 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - vvi:100266134 737.643
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1021 Vvi18g983 ECH
Vvi4g1016 Vvi18g983 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g983 . . Bda01g00519 . Bpe02g00376 . . Bma01g02336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01988 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218