Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g987 ATGGGCATTGGGAAGGATGGGAAATTACCATGGAATTTGCCCTCTGACCTCAAATTTTTCAAGGAGCTTACAATGACTACATCAGATCCTGGGAAAAAGAATGCAGTAGTAATGGGCAGGAAAACATGGGAAAGTATCCCCCTCAACTATCGACCTTTACCTGGTCGCCTTAATGTGGTGCTCACTCGGTCTGGGAGTTTTGATAATGCAACTGTAGAGAATGTTGTCATATGTGGAAGCATGCCGTCAGCTTTGAAATTACTGGCAGAATCTCCTTATTGTTTGTCAATAGACAAGGTGTTTGTTATAGGGGGTGGTCAGATATTAAGGGAAGCACTGAATGCTCCTGGTTGTGATGCCATCCACATCACTAAAATTGAGACAAGCATTGAATGTGACACTTTCATTCCCACTATTGACACTTCTGTTTTTCATCCATGGTATTCATCAGTACCATTGTTGGAAAACAACATTCTATATTCTTTTGTGACTTATGTTCGTCTCAAGATACAGGGTTTTACCTTCTTGCCGAAGATGATTTTTGAGAGACATGATGAGTTTATGTATCTAAGACAACTAAAAGAAATTATCTCAAGTGGCGCTCATAAAGCTGACAAGACAGGGACTGGCACTGTATCAAAATTTGGTTGTCAGATGCGTTTCAATCTGCGTTTGTCTTTTCCGCTTCTTACCACCAAGAGAGTATTTTGGAGAGGTGTTGTTGAAGAGCTTTTGTGGTTTATTAGTGGTTCAACAAATGCAAAGGTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGTATTGGTTTGACAGATAGGGAAGAGGGGGACTTGGGACCCATATATGGGTTCCAGTGGAGACACTTTGGTGCCAGGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAATTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGGTATTCTCCCTGGTGATTTCATCCTCATAATTGGTGATGCTCATATTTATAAAACTCATATTAGGCCTCTGGAGGAGCAGCTTCAGAAACTTCCTAAACCTTTCCCTATTTTGAAGATCAATCCACAGAAGAAGGATATTGAATCATTTGTGGCAGCTGATTTTGAGCTTATAGGTTATAATCCTCACCAGAAGATTGAAATGAAAATGTCAGTGTAG 1410 40.57 MGIGKDGKLPWNLPSDLKFFKELTMTTSDPGKKNAVVMGRKTWESIPLNYRPLPGRLNVVLTRSGSFDNATVENVVICGSMPSALKLLAESPYCLSIDKVFVIGGGQILREALNAPGCDAIHITKIETSIECDTFIPTIDTSVFHPWYSSVPLLENNILYSFVTYVRLKIQGFTFLPKMIFERHDEFMYLRQLKEIISSGAHKADKTGTGTVSKFGCQMRFNLRLSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQKKDIHIWDGNASREYLDSIGLTDREEGDLGPIYGFQWRHFGARYTNMHADYMGKGFDQLLDVIDKIKNKPDDRRIILSSWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGILPGDFILIIGDAHIYKTHIRPLEEQLQKLPKPFPILKINPQKKDIESFVAADFELIGYNPHQKIEMKMSV* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11025677 11029475 - Vvi18g987 Vvi18g987 780690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g987 469 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 469 - -
Vvi18g987 469 CDD TS_Pyrimidine_HMase 189 422 IPR023451 -
Vvi18g987 469 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 167 IPR001796 GO:0004146|GO:0046654
Vvi18g987 469 Hamap Thymidylate synthase [thyA]. 186 469 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 178 469 IPR036926 -
Vvi18g987 469 Pfam Thymidylate synthase 189 469 IPR023451 -
Vvi18g987 469 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 2 24 IPR017925 GO:0004146
Vvi18g987 469 Gene3D Dihydrofolate Reductase, subunit A 1 168 IPR024072 -
Vvi18g987 469 ProSitePatterns Thymidylate synthase active site. 331 359 IPR020940 GO:0004799|GO:0006231
Vvi18g987 469 PANTHER THYMIDYLATE SYNTHASE 1 1 469 IPR045097 GO:0016741
Vvi18g987 469 SUPERFAMILY Dihydrofolate reductase-like 1 167 IPR024072 -
Vvi18g987 469 PRINTS Thymidylate synthase family signature 227 248 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 PRINTS Thymidylate synthase family signature 320 339 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 PRINTS Thymidylate synthase family signature 346 361 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 PRINTS Thymidylate synthase family signature 364 390 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 PRINTS Thymidylate synthase family signature 402 419 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 TIGRFAM thym_sym: thymidylate synthase 189 469 IPR000398 GO:0004799|GO:0006231
Vvi18g987 469 CDD DHFR 1 166 IPR001796 GO:0004146|GO:0046654
Vvi18g987 469 PIRSF DHFR-TS 1 469 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vvi18g987 469 Pfam Dihydrofolate reductase 2 167 IPR001796 GO:0004146|GO:0046654
Vvi18g987 469 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 166 469 IPR036926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g987 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - vvi:100255872 950.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g353 Vvi18g987 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43