Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g988 ATGTCCGGCCCACTTGACCGATTCGCCAGGCCTTGTTTTGAGGGGGCCAATCACGATGAACGAAGAGAACGGAAATCGGATTTCGAAAACTCGGAAGATGACAGGAGGACCAGAATTGGGAATCTTAAGAAGAAAGCAATCAATGCCTCCAGTAAATTCAAGCATTCTCTCAAGAAAAAGGGCAGGAGAAAGTCTCACGATCACCTCCTTTCTGTTTCCATCAAGGATGTTCGAGATGTGGAGGAGCTTCAAGCTGTGGAAGCATTTCGACAGGCGCTCATTTCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGGATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGTTATCACGGTGTGGATAAGGAGGGGAGACCCGTTTATATTGAAAGACTTGGAAAAGTTGATTCAAACAAGCTGGTTCAAGTCACAACTTTGGATCGGTATGTGAAATACCATGTGCAGGAATTTGAAAAGTGTTTTGCATTTAAGTTTCCTGCTTGCTCTGTTGCAGCAAAGAGGCACATTGATTCAAATACAACACTTTTAGATGTTCAAGGCGTGGGTTTTAAGAACCTAACCAAAAATGCAAGAGACCTCATTATGCGGTTGCAGAAAATTGATGGAGACAACTATCCCGAGACACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATGTTCTTGGTAATAAGTACCAGAGCAAATTGCTTGAAATAATTGATGCAAGTGAGTTGCCCGAATTTCTCGGTGGTAGCTGTATCTGTGCAGATCAGGGAGGTTGTTTGAAGTCTGATAAGGGGCCGTGGAAAGATCCAAACATATTAAAGATGGTTCTCAGTGGTGAAGCACAATTTTCTAGACGAATAGTAACTGTTTCAAACAGTGATGGAAGAGTAATCACTAAAGAAAAGCCAATTTATTCAGTGATAAAAAGCAGTGACACATCTACGGCAGAGTCAGGATCCGAAGTGGAAGAATTCACTTCTCCCGAAGTAACAAGGGGCTATCTGCATCCAAGGTTGACTCCTGTCCGTGAAGAAGTTAGGATGGCTGGAAAGGTAAACTCTGCTGGTGGCTTTTCTGAATATGATGAAGTGCCCATGGTTGATAAGGCTGTGGATGCGGAATGGAAGAAGCAACTCTCCCTTCAAGACCCTTGTGATTCAAGAGGGATACTTTCTCTGCCAAGAGCAGAAAAGACTCCAGAAGGTTTGTGTGCTAAAATTTGGGGTGTGTTGATAACCTTCTTCCTAGCCCTTGCTACTCTTTTCCATTCAGTAGCATCCCGGGTGACTAAGAAACTTCCTGATTCTGTGTCCAATTCTGGCCACAACATTCCCAACCTGACACTTGAACCAATTTCTGAGGAGGAGTTACGTCCTCCTTCACCAGCTCCAAGGTTGACAGAGGCAGACCTTTTCTCATCTGTTCTGAAAAGGGTGGGCGAGCTTGAGGAGAAGGTGGACTTGCTGCAGGCAAAGCCATTCAAGATGCCTCATGAGAAAGAAGAGTTGCTGAATGCTGCTGTTTGTAGGGTGGATGCCTTAGAAGCAGAGCTAATTGCTACAAAGAAGGCTTTGCATGAAGCTTTAATGAGACAAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGAAAAAGAAGTTTTGTTGGTGA 1872 43.75 MSGPLDRFARPCFEGANHDERRERKSDFENSEDDRRTRIGNLKKKAINASSKFKHSLKKKGRRKSHDHLLSVSIKDVRDVEELQAVEAFRQALISDDLLPDRHDDYHMLLRFLKARKFDMEKAKHMWTEMIHWRKNFGTDTILEDFEFKELNEVLKYYPQGYHGVDKEGRPVYIERLGKVDSNKLVQVTTLDRYVKYHVQEFEKCFAFKFPACSVAAKRHIDSNTTLLDVQGVGFKNLTKNARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCICADQGGCLKSDKGPWKDPNILKMVLSGEAQFSRRIVTVSNSDGRVITKEKPIYSVIKSSDTSTAESGSEVEEFTSPEVTRGYLHPRLTPVREEVRMAGKVNSAGGFSEYDEVPMVDKAVDAEWKKQLSLQDPCDSRGILSLPRAEKTPEGLCAKIWGVLITFFLALATLFHSVASRVTKKLPDSVSNSGHNIPNLTLEPISEEELRPPSPAPRLTEADLFSSVLKRVGELEEKVDLLQAKPFKMPHEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDRQEEAKSQKKKFCW* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11035475 11042060 - Vvi18g988 Vvi18g988 780691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g988 623 MobiDBLite consensus disorder prediction 1 35 - -
Vvi18g988 623 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 150 324 IPR001251 -
Vvi18g988 623 Coils Coil 580 600 - -
Vvi18g988 623 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 12 620 - -
Vvi18g988 623 SMART CRAL_TRIO_N_2 105 130 IPR011074 -
Vvi18g988 623 PRINTS Cellular retinaldehyde-binding protein signature 108 130 - -
Vvi18g988 623 PRINTS Cellular retinaldehyde-binding protein signature 277 296 - -
Vvi18g988 623 Gene3D - 138 348 IPR036865 -
Vvi18g988 623 CDD SEC14 151 318 IPR001251 -
Vvi18g988 623 Pfam CRAL/TRIO domain 156 318 IPR001251 -
Vvi18g988 623 Gene3D - 73 137 - -
Vvi18g988 623 MobiDBLite consensus disorder prediction 12 35 - -
Vvi18g988 623 Pfam CRAL/TRIO, N-terminal domain 102 129 IPR011074 -
Vvi18g988 623 SMART sec14_4 150 321 IPR001251 -
Vvi18g988 623 PANTHER - 12 620 - -
Vvi18g988 623 SUPERFAMILY CRAL/TRIO domain 150 344 IPR036865 -
Vvi18g988 623 SUPERFAMILY CRAL/TRIO N-terminal domain 80 146 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g988 - - - vvi:100248963 1246.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g350 Vvi18g988 ECH
Vvi4g1029 Vvi18g988 ECH
Vvi3g351 Vvi18g988 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1930 . Cone17ag1356 Cone20ag0126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00398 Cam11g0444 Cec11g0439 Cco11g0431 Clacu11g0567 Cmu11g0423 Cre11g0908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43