Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g995 ATGGATACGGATTTGCACCAGATTATTAAGTCCTCCCAAGCGCTTACTAATGACCACTGCCAATATTTTCTGTTCCAGTTGCTCCGAGGCCTGAAGTATCTCCACTCAGCAAACATCCTCCACCGAGACTTGAAGCCTGGAAACCTTCTTATCAATGCAAACTGTGACCTAAAAATATGTGATTTTGGGCTAGCTCGAACTAGCACTGGCAAGGGCCAGTTCATGACTGAGTATGTGGTCACTCGCTGGTACAGGGCCCCAGAACTCCTCCTCTGCTGTGACAACTATGGAACCTCCATTGATGTGTGGTCTGTTGGATGCATCTTTGCGGAGCTTCTCGGCCGGAAACCTATATTCCCTGGCACAGAGTGGACGCCTTTTTCCCGTCTTTACCCAAATGCCCATCCCATGGCAATTGATCTGCTGCAGAAGATGCTAATTTTTGACCCCTCAAAGAGGATTGCACAGGTCCCCATTGATCTGGACATAGACGAGGATTTAGGGGAAGAGATGATAAGGGAGATGATGTGGAAGGAAATGCTCCATTATCATCCTGAAGCTGTTACAAGCAATGGGGAGGCAAGTTAG 588 47.96 MDTDLHQIIKSSQALTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSTGKGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTEWTPFSRLYPNAHPMAIDLLQKMLIFDPSKRIAQVPIDLDIDEDLGEEMIREMMWKEMLHYHPEAVTSNGEAS* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11125764 11129338 + Vvi18g995 Vvi18g995 780698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g995 195 Pfam Protein kinase domain 3 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g995 195 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Vvi18g995 195 Gene3D Transferase(Phosphotransferase) domain 1 125 155 - -
Vvi18g995 195 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g995 195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Vvi18g995 195 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 125 155 - -
Vvi18g995 195 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 155 191 - -
Vvi18g995 195 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 123 - -
Vvi18g995 195 SUPERFAMILY Protein kinase-like (PK-like) 1 155 IPR011009 -
Vvi18g995 195 SMART serkin_6 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g995 195 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 155 191 - -
Vvi18g995 195 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 123 - -
Vvi18g995 195 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 125 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1031 Vvi18g995 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76403 PF00069 Pkinase 1.90E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g995 K20535 - vvi:100254083 363.229