Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18randomg174 ATGAAAAATCGAGCCGATCCTCACGCGCCGATACCGTCGTACCGGGGCGTCCGGAAGCGGAAATGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGGGGAAGAAGACCCGCATTTGGCTCGGCAGCTACGAGGCCCCCGAGATGGCGGCGGCGGCCTACGACGTGGCCGCGCTCCACCTCAAGGGCCACAGGGCGGAGCTCAATTTCCCCGAGCTGGCGCCGAGCTTCCCTCGGCCGACTAGCTTCAGTCCCGAGGACGTGCAGTTCGCGTCGGCGCAGGCGGCATTGCATATAAAAAGCATAGCGTCGGGGGACGTTTCGGCGAGGTCGCCGTCCAGGGTGGGTATGAGCTCGGTTCCGACTCGGGTTGGGTTGTCAGCGAGTGAGATTCGGGAGATTAACGAGTGGCCGATGGACTCGCCCAGGATGTGGATGATGGAGTTGAGAGAGGAGCCTCTGGTCTTGAGTGATGAGATATTCGAACTCAGTGAGTGGGAAGAAGTGGAAAATCAGTATTCAATTTGGGATTTATAG 534 59.74 MKNRADPHAPIPSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLKGHRAELNFPELAPSFPRPTSFSPEDVQFASAQAALHIKSIASGDVSARSPSRVGMSSVPTRVGLSASEIREINEWPMDSPRMWMMELREEPLVLSDEIFELSEWEEVENQYSIWDL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18randomg174 177 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Vvi18randomg174 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 176 - -
Vvi18randomg174 177 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Vvi18randomg174 177 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Vvi18randomg174 177 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Vvi18randomg174 177 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Vvi18randomg174 177 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Vvi18randomg174 177 PRINTS Ethylene responsive element binding protein signature 52 72 IPR001471 GO:0003700|GO:0006355
Vvi18randomg174 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 12 176 - -
Vvi18randomg174 177 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14378 PF00847 AP2 2.10E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18randomg174 - - vvi:100258486 348.591