Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18randomg174 | ATGAAAAATCGAGCCGATCCTCACGCGCCGATACCGTCGTACCGGGGCGTCCGGAAGCGGAAATGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGGGGAAGAAGACCCGCATTTGGCTCGGCAGCTACGAGGCCCCCGAGATGGCGGCGGCGGCCTACGACGTGGCCGCGCTCCACCTCAAGGGCCACAGGGCGGAGCTCAATTTCCCCGAGCTGGCGCCGAGCTTCCCTCGGCCGACTAGCTTCAGTCCCGAGGACGTGCAGTTCGCGTCGGCGCAGGCGGCATTGCATATAAAAAGCATAGCGTCGGGGGACGTTTCGGCGAGGTCGCCGTCCAGGGTGGGTATGAGCTCGGTTCCGACTCGGGTTGGGTTGTCAGCGAGTGAGATTCGGGAGATTAACGAGTGGCCGATGGACTCGCCCAGGATGTGGATGATGGAGTTGAGAGAGGAGCCTCTGGTCTTGAGTGATGAGATATTCGAACTCAGTGAGTGGGAAGAAGTGGAAAATCAGTATTCAATTTGGGATTTATAG | 534 | 59.74 | MKNRADPHAPIPSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLKGHRAELNFPELAPSFPRPTSFSPEDVQFASAQAALHIKSIASGDVSARSPSRVGMSSVPTRVGLSASEIREINEWPMDSPRMWMMELREEPLVLSDEIFELSEWEEVENQYSIWDL* | 178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18randomg174 | 177 | ProSiteProfiles | AP2/ERF domain profile. | 13 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg174 | 177 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 12 | 176 | - | - | |
Vvi18randomg174 | 177 | SUPERFAMILY | DNA-binding domain | 13 | 71 | IPR016177 | GO:0003677 | |
Vvi18randomg174 | 177 | SMART | rav1_2 | 13 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg174 | 177 | CDD | AP2 | 12 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg174 | 177 | Gene3D | AP2/ERF domain | 13 | 71 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi18randomg174 | 177 | PRINTS | Ethylene responsive element binding protein signature | 14 | 25 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg174 | 177 | PRINTS | Ethylene responsive element binding protein signature | 52 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg174 | 177 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 | 12 | 176 | - | - | |
Vvi18randomg174 | 177 | Pfam | AP2 domain | 12 | 63 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14378 | PF00847 | AP2 | 2.10E-13 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18randomg174 | - | - | vvi:100258486 | 348.591 |