Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18randomg175 | ATGGAGGACGATCAAGGTCACAGCCATGGAGGTGCGGTTGCTTCTTCTTCAGGTTACAGGGGTGTCCGGAAGAGGAGATGGGGCAAATGGGTGTCCGAAATACGCGAACCGGGCACCAAAACCCGGATTTGGCTAGGCAGCTTTGAGACCCCGGAGATGGCAGCCATGGCCTATGATGCAGCCGCATTGCACTTTAGGGGCCATGGGGCTAAGCTCAATTTTCCTGAGCTGGCACCCAATCTTCCTCGGCCCGCGAGCTCCGCTGCCGAGCACATCCGACTGGCGGCGCAGGAGGCCGCTCTGCGGTTGACCCGGGCGCCAGAGTCAGCCGGCCAGTCAGGATCAGGTTCTGGGTTGGGACCAGTCCGGGTCGGTCTGTCGCCGAGTCAGATTCAGGCGATCAATGACTCGACGTTGGACTCGCCGAGGAACTGGACCGAGTTGGCTCAGACCGTATTCTTAGACGAGTCAATGATCATGTCTTGTGAGTTGGAGATAAGTGACTGGGATGAGGAGGAGGTTGAAGTCAATGAGTCACTCTGGGATTAA | 549 | 57.92 | MEDDQGHSHGGAVASSSGYRGVRKRRWGKWVSEIREPGTKTRIWLGSFETPEMAAMAYDAAALHFRGHGAKLNFPELAPNLPRPASSAAEHIRLAAQEAALRLTRAPESAGQSGSGSGLGPVRVGLSPSQIQAINDSTLDSPRNWTELAQTVFLDESMIMSCELEISDWDEEEVEVNESLWD* | 183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18randomg175 | 182 | SMART | rav1_2 | 18 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg175 | 182 | Gene3D | AP2/ERF domain | 18 | 76 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi18randomg175 | 182 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 13 | 182 | - | - | |
Vvi18randomg175 | 182 | SUPERFAMILY | DNA-binding domain | 17 | 76 | IPR016177 | GO:0003677 | |
Vvi18randomg175 | 182 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 | 13 | 182 | - | - | |
Vvi18randomg175 | 182 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg175 | 182 | Pfam | AP2 domain | 17 | 68 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg175 | 182 | CDD | AP2 | 17 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg175 | 182 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi18randomg175 | 182 | PRINTS | Ethylene responsive element binding protein signature | 41 | 57 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14379 | PF00847 | AP2 | 2.90E-14 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18randomg175 | - | - | vvi:100253356 | 339.347 |