Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18randomg175 ATGGAGGACGATCAAGGTCACAGCCATGGAGGTGCGGTTGCTTCTTCTTCAGGTTACAGGGGTGTCCGGAAGAGGAGATGGGGCAAATGGGTGTCCGAAATACGCGAACCGGGCACCAAAACCCGGATTTGGCTAGGCAGCTTTGAGACCCCGGAGATGGCAGCCATGGCCTATGATGCAGCCGCATTGCACTTTAGGGGCCATGGGGCTAAGCTCAATTTTCCTGAGCTGGCACCCAATCTTCCTCGGCCCGCGAGCTCCGCTGCCGAGCACATCCGACTGGCGGCGCAGGAGGCCGCTCTGCGGTTGACCCGGGCGCCAGAGTCAGCCGGCCAGTCAGGATCAGGTTCTGGGTTGGGACCAGTCCGGGTCGGTCTGTCGCCGAGTCAGATTCAGGCGATCAATGACTCGACGTTGGACTCGCCGAGGAACTGGACCGAGTTGGCTCAGACCGTATTCTTAGACGAGTCAATGATCATGTCTTGTGAGTTGGAGATAAGTGACTGGGATGAGGAGGAGGTTGAAGTCAATGAGTCACTCTGGGATTAA 549 57.92 MEDDQGHSHGGAVASSSGYRGVRKRRWGKWVSEIREPGTKTRIWLGSFETPEMAAMAYDAAALHFRGHGAKLNFPELAPNLPRPASSAAEHIRLAAQEAALRLTRAPESAGQSGSGSGLGPVRVGLSPSQIQAINDSTLDSPRNWTELAQTVFLDESMIMSCELEISDWDEEEVEVNESLWD* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18randomg175 182 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vvi18randomg175 182 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vvi18randomg175 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 182 - -
Vvi18randomg175 182 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Vvi18randomg175 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 13 182 - -
Vvi18randomg175 182 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vvi18randomg175 182 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Vvi18randomg175 182 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vvi18randomg175 182 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vvi18randomg175 182 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14379 PF00847 AP2 2.90E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18randomg175 - - vvi:100253356 339.347