Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18randomg206 ATGGGGTGCATTTGCTCAAAGGAAGCCTCCGTTGATGAATATGTGGATTATAATGAGAGAGAGAAGGAGAAAGGGAAAGAGTTGAATAAGGATTCAGTGCAGTTGGTTGCCCCCTCCACGGGAGAGGAGCCAACTAAGGCTTCTCATCAAAGAAGGTTGACATTAGATATGGAAAACAACGTAGGGCCATCACCAATGTCTCGTATAGTTAGCATGCCCAATGGTGCCAAAGGAGAACAGATTGTCGCTGGATGGCCATCATGGTTATCTTCGGTTGCTGGAGAAGCCATCCAAGGGTGGGTGCCTCTAAGGCCCGAGTCATATGAGAAGTTAGACAAAATTGGACAAGGAACTTACAGCACTGTATATAGGGCCCGTGACCTTGACAGTGGTAAGATTGTGGCATTGAAGAAAGTGCGATTTGGTAATATGGATCCAGAAAGTGTTCGTTTTATGGCTAGAGAAATCCATGTTCTGCGTAAACTTGACCACCCAAATGTTATGAAGCTTGAGGGCCTAATCACTTCGAGGACATCAGGTACCTTGTACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGGCTTTCTGCAACACCTGGTATCAAGTTCACTGAACCACAGATTAAGTGTTACATGCAACAACTACTTCGTGGACTTGAGCACTGCCATAGTCGGGGTGTTCTGCATCGAGACATCAAGGGTTCAAATCTTCTAATTGACAATAAAGGAGTCCTCAAAATTGGAGACTTTGGTCTGGCAAGCTTTAGGTCTGATCCAAGTCAACCATTAACTAGTCGTGTTGTAACTCTGTGGTACAGACCTCCTGAGCTTTTGCTCGGTGCTACCAAGTATGGAGCTTCTGTGGATCTATGGAGCACTGGTTGTATCATTGCAGAACTGTTTGCTGGGAGTCCTATCATGCCTGGAAGTACGGAGGTGGAGCAAATTCATAAAATCTTTAAGCTTTGTGGTTCACCCTCTGAGGAATACTGGCAGAAATCAAAATTGGCACATGCATCCAGTTTCAAACCTCAACATCCTTACAAGCGCCGCCTAGCTGAGACATTCAGAAATTTCCCTTCTTCAGCTTTGGCTCTCGTTGATGTGCTTCTTTCAGTAGAGCCAGATGCAAGGGGAACAGCTGCTTCTGCACTCAAAAGTGAGTTCTTTACAACAAAGCCCCTCCCTTGTGATCCATCAAGTTTGCCAAAATATGTTCCAAGCAAAGAATACGATGCCAAGCTCCGAAATGAGGAAGCAAGAAGGCAAAGGGCAGAGGCTGTAAAAGGACGTGGAGCTGAATCTGTTAGAAGGGGTTCAAGACAATCCAAGGATGTGCCAACACCAGAATTTAAGCCTCAGGCACAAGCCTCTTTGCAGACAAACACAAAATGCATCAGTGAAAAATACAAACCTGGAGAGGATAGTGGGTCCAACTTTCGGATGGAACCTCATAGAGGAACTGTGCCAAATGGTTTGTCTCATTCTACTTTGATGATTAACCAAAATGCCGTTGGATCATCAGAGAAGAAGGTTGAGGATGAGGCCCAATTGGGTTATGGAAATACATTTGACTCTTCAAGAAATAAAGTAGAATTGAGGACCCATGGATCTCACATGCCTCATGGAGCAGCAGGTGTGTCAAACTCCTCTCATAGGAAGGACGAAAGGATCTCTGGCAAGGAATCTGTTACCGGCTATGTACCCAAGAAAAACAGGATGCACTACTCTGGACCACTGATGCCGTCTGGAGGGAACATTGAAGAAATGCTCAAAGACCATGAGAGACAGATCCAAGAGGCTGTCCGCAAAGCACGAATTGACAAGACCCAACAAAAACTGTGA 1848 45.18 MGCICSKEASVDEYVDYNEREKEKGKELNKDSVQLVAPSTGEEPTKASHQRRLTLDMENNVGPSPMSRIVSMPNGAKGEQIVAGWPSWLSSVAGEAIQGWVPLRPESYEKLDKIGQGTYSTVYRARDLDSGKIVALKKVRFGNMDPESVRFMAREIHVLRKLDHPNVMKLEGLITSRTSGTLYLVFEYMEHDLAGLSATPGIKFTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNKGVLKIGDFGLASFRSDPSQPLTSRVVTLWYRPPELLLGATKYGASVDLWSTGCIIAELFAGSPIMPGSTEVEQIHKIFKLCGSPSEEYWQKSKLAHASSFKPQHPYKRRLAETFRNFPSSALALVDVLLSVEPDARGTAASALKSEFFTTKPLPCDPSSLPKYVPSKEYDAKLRNEEARRQRAEAVKGRGAESVRRGSRQSKDVPTPEFKPQAQASLQTNTKCISEKYKPGEDSGSNFRMEPHRGTVPNGLSHSTLMINQNAVGSSEKKVEDEAQLGYGNTFDSSRNKVELRTHGSHMPHGAAGVSNSSHRKDERISGKESVTGYVPKKNRMHYSGPLMPSGGNIEEMLKDHERQIQEAVRKARIDKTQQKL* 616
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 537 587 - -
Vvi18randomg206 615 Coils Coil 409 429 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 415 495 - -
Vvi18randomg206 615 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vvi18randomg206 615 PANTHER OS02G0559300 PROTEIN 56 538 - -
Vvi18randomg206 615 Coils Coil 592 612 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 448 468 - -
Vvi18randomg206 615 ProSiteProfiles Protein kinase domain profile. 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18randomg206 615 Pfam Protein kinase domain 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18randomg206 615 SMART serkin_6 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18randomg206 615 Gene3D Phosphorylase Kinase; domain 1 104 195 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 415 446 - -
Vvi18randomg206 615 SUPERFAMILY Protein kinase-like (PK-like) 102 399 IPR011009 -
Vvi18randomg206 615 PANTHER CELL DIVISION PROTEIN KINASE 56 538 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 21 48 - -
Vvi18randomg206 615 Gene3D Transferase(Phosphotransferase) domain 1 196 431 - -
Vvi18randomg206 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vvi18randomg206 615 CDD STKc_CDK9_like 108 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18randomg206 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - vvi:100265500 1193.72
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi15g123 . 1 295 Core Cell Cycle Gene Families AT3G48750 86.8 6.8e-153 537.0
Vvi18g35 ECH 1 308 Core Cell Cycle Gene Families AT3G48750 54.4 5.8e-96 347.8
Vvi8g18 ECH 82 373 Core Cell Cycle Gene Families AT3G48750 58.4 7.6e-96 347.4
Vvi8g18 ECH 82 379 Core Cell Cycle Gene Families AT3G54180 83.9 1.3e-149 526.2
Vvi18g35 ECH 1 310 Core Cell Cycle Gene Families AT3G54180 64.4 2.4e-116 415.6
Vvi15g123 . 1 290 Core Cell Cycle Gene Families AT3G54180 55.2 7.0e-92 334.3
Vvi8g18 ECH 82 379 Core Cell Cycle Gene Families AT2G38620 70.1 9.2e-119 423.3
Vvi18g35 ECH 1 310 Core Cell Cycle Gene Families AT2G38620 54.6 6.2e-91 330.9
Vvi18g35 ECH 1 308 Core Cell Cycle Gene Families AT1G76540 83.4 4.2e-153 537.7
Vvi8g18 ECH 82 373 Core Cell Cycle Gene Families AT1G76540 67.2 9.2e-116 413.7
Vvi15g123 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.0 1.3e-93 340.1
Vvi18g35 ECH 1 314 Core Cell Cycle Gene Families AT1G20930 82.5 1.7e-154 542.3
Vvi8g18 ECH 82 379 Core Cell Cycle Gene Families AT1G20930 67.3 8.9e-119 423.7
Vvi15g123 . 1 290 Core Cell Cycle Gene Families AT1G20930 54.7 2.8e-96 349.0
Vvi6g904 ECH 1 459 Core Cell Cycle Gene Families AT5G10270 73.9 3.0e-209 724.9
Vvi7randomg13 . 1 205 Core Cell Cycle Gene Families AT5G10270 86.3 1.6e-106 383.6
Vvi19g220 ECH 123 459 Core Cell Cycle Gene Families AT5G10270 53.0 3.3e-99 359.4
Vvi5g361 ECH 102 418 Core Cell Cycle Gene Families AT5G10270 53.5 1.3e-98 357.5
Vvi18randomg206 . 100 415 Core Cell Cycle Gene Families AT5G10270 52.1 5.8e-96 348.6
Vvi12g1180 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.1 7.6e-96 348.2
Vvi14g419 ECH 114 432 Core Cell Cycle Gene Families AT5G10270 51.3 1.3e-95 347.4
Vvi12g293 ECH 52 368 Core Cell Cycle Gene Families AT5G10270 52.0 7.1e-94 341.7
Vvi17g47 . 96 408 Core Cell Cycle Gene Families AT5G10270 51.8 3.9e-92 335.9
Vvi5g1148 . 93 396 Core Cell Cycle Gene Families AT5G10270 53.1 3.7e-90 329.3
Vvi4g728 . 133 436 Core Cell Cycle Gene Families AT5G10270 53.1 1.8e-89 327.0
Vvi6g904 ECH 65 457 Core Cell Cycle Gene Families AT5G64960 69.6 2.8e-169 592.0
Vvi7randomg13 . 25 205 Core Cell Cycle Gene Families AT5G64960 86.2 5.5e-93 338.6
Vvi19g220 ECH 177 439 Core Cell Cycle Gene Families AT5G64960 54.7 6.8e-83 305.1
Vvi18randomg206 . 154 415 Core Cell Cycle Gene Families AT5G64960 54.0 2.6e-82 303.1
Vvi5g361 ECH 156 418 Core Cell Cycle Gene Families AT5G64960 52.5 2.8e-81 299.7
Vvi12g1180 . 196 458 Core Cell Cycle Gene Families AT5G64960 52.9 4.1e-80 295.8
Vvi14g419 ECH 168 432 Core Cell Cycle Gene Families AT5G64960 51.4 9.1e-80 294.7
Vvi12g293 ECH 106 368 Core Cell Cycle Gene Families AT5G64960 52.2 2.2e-78 290.0
Vvi5g1148 . 134 396 Core Cell Cycle Gene Families AT5G64960 52.5 3.8e-78 289.3
Vvi4g728 . 174 436 Core Cell Cycle Gene Families AT5G64960 52.5 1.5e-77 287.3
Vvi17g47 . 150 420 Core Cell Cycle Gene Families AT5G64960 50.7 1.2e-76 284.3
Vvi17g254 ECH 10 416 Core Cell Cycle Gene Families AT1G73690 74.4 5.3e-169 590.9
Vvi14g835 ECH 2 343 Core Cell Cycle Gene Families AT1G73690 72.2 1.6e-144 509.6
Vvi14g835 ECH 10 340 Core Cell Cycle Gene Families AT1G66750 77.0 2.5e-154 542.0
Vvi17g254 ECH 14 344 Core Cell Cycle Gene Families AT1G66750 75.9 8.8e-152 533.5
Vvi15g123 . 1 287 Core Cell Cycle Gene Families AT1G66750 50.2 6.1e-76 281.6
Vvi17g254 ECH 10 417 Core Cell Cycle Gene Families AT1G18040 74.5 4.3e-171 597.8
Vvi14g835 ECH 1 347 Core Cell Cycle Gene Families AT1G18040 74.4 7.4e-147 517.3
Vvi7g1265 ECH 1 482 Core Cell Cycle Gene Families AT5G63610 75.7 1.2e-204 709.5
Vvi18g229 . 93 547 Core Cell Cycle Gene Families AT1G44110 62.2 1.3e-147 520.0
Vvi18g230 . 2 340 Core Cell Cycle Gene Families AT1G44110 63.3 8.7e-123 437.6
Vvi4g368 . 121 401 Core Cell Cycle Gene Families AT1G44110 55.0 1.8e-88 323.6
Vvi9g421 . 212 490 Core Cell Cycle Gene Families AT1G44110 55.2 1.7e-86 317.0
Vvi18g693 ECH 37 362 Core Cell Cycle Gene Families AT1G44110 50.3 1.6e-84 310.5
Vvi18g229 . 82 545 Core Cell Cycle Gene Families AT1G77390 52.2 6.0e-121 431.4
Vvi18g230 . 58 338 Core Cell Cycle Gene Families AT1G77390 63.0 1.9e-103 373.2
Vvi4g368 . 121 399 Core Cell Cycle Gene Families AT1G77390 53.9 1.4e-80 297.4
Vvi9g421 . 211 490 Core Cell Cycle Gene Families AT1G77390 54.1 5.1e-80 295.4
Vvi4g368 . 121 399 Core Cell Cycle Gene Families AT5G25380 72.0 4.8e-110 395.2
Vvi18g229 . 252 540 Core Cell Cycle Gene Families AT5G25380 53.3 1.9e-82 303.5
Vvi18g693 ECH 58 352 Core Cell Cycle Gene Families AT5G25380 50.3 2.0e-79 293.5
Vvi18g230 . 58 330 Core Cell Cycle Gene Families AT5G25380 53.1 3.8e-75 279.3
Vvi4g368 . 121 337 Core Cell Cycle Gene Families AT5G11300 76.5 2.7e-91 332.8
Vvi9g421 . 212 428 Core Cell Cycle Gene Families AT5G11300 70.5 8.5e-85 311.2
Vvi18g229 . 265 485 Core Cell Cycle Gene Families AT5G11300 56.6 6.5e-69 258.5
Vvi18g693 ECH 81 300 Core Cell Cycle Gene Families AT5G11300 55.9 2.3e-66 250.0
Vvi18g230 . 58 277 Core Cell Cycle Gene Families AT5G11300 54.5 6.3e-64 241.9
Vvi3g655 ECH 70 272 Core Cell Cycle Gene Families AT5G11300 51.5 9.4e-52 201.4
Vvi9g421 . 19 491 Core Cell Cycle Gene Families AT1G15570 56.3 1.4e-128 456.8
Vvi4g368 . 4 399 Core Cell Cycle Gene Families AT1G15570 52.7 4.0e-104 375.6
Vvi18g693 ECH 81 359 Core Cell Cycle Gene Families AT1G15570 52.7 8.1e-81 298.1
Vvi18g229 . 265 532 Core Cell Cycle Gene Families AT1G15570 56.3 1.1e-80 297.7
Vvi18g230 . 49 337 Core Cell Cycle Gene Families AT1G15570 51.6 7.1e-77 285.0
Vvi9g421 . 1 490 Core Cell Cycle Gene Families AT1G80370 54.8 6.9e-128 454.5
Vvi4g368 . 114 399 Core Cell Cycle Gene Families AT1G80370 69.2 9.4e-109 391.0
Vvi18g229 . 265 545 Core Cell Cycle Gene Families AT1G80370 54.8 8.3e-81 298.1
Vvi18g693 ECH 81 351 Core Cell Cycle Gene Families AT1G80370 53.5 3.5e-79 292.7
Vvi18g230 . 58 325 Core Cell Cycle Gene Families AT1G80370 52.2 8.3e-73 271.6
Vvi18g693 ECH 1 364 Core Cell Cycle Gene Families AT5G43080 62.6 1.8e-120 429.5
Vvi4g368 . 122 401 Core Cell Cycle Gene Families AT5G43080 52.7 7.0e-80 294.7
Vvi9g421 . 214 490 Core Cell Cycle Gene Families AT5G43080 52.5 7.2e-77 284.6
Vvi18g693 ECH 1 363 Core Cell Cycle Gene Families AT1G47210 60.2 5.4e-123 438.0
Vvi4g368 . 122 389 Core Cell Cycle Gene Families AT1G47210 53.0 9.0e-78 287.7
Vvi9g421 . 214 490 Core Cell Cycle Gene Families AT1G47210 51.8 5.0e-76 282.0
Vvi18g693 ECH 81 363 Core Cell Cycle Gene Families AT1G47220 61.5 5.7e-100 361.3
Vvi4g368 . 122 389 Core Cell Cycle Gene Families AT1G47220 52.6 2.0e-73 273.1
Vvi18g229 . 267 532 Core Cell Cycle Gene Families AT1G47220 50.4 2.9e-72 269.2
Vvi18g693 ECH 1 363 Core Cell Cycle Gene Families AT1G47230 60.6 2.3e-121 432.6
Vvi4g368 . 124 401 Core Cell Cycle Gene Families AT1G47230 51.8 9.3e-75 277.7
Vvi9g421 . 215 490 Core Cell Cycle Gene Families AT1G47230 51.8 2.7e-74 276.2
Vvi8g490 . 1 453 Core Cell Cycle Gene Families AT4G37490 51.5 6.2e-107 384.8
Vvi13g75 . 1 462 Core Cell Cycle Gene Families AT4G37490 51.0 4.5e-105 378.6
Vvi8g490 . 1 348 Core Cell Cycle Gene Families AT5G06150 54.7 9.0e-85 310.8
Vvi13g75 . 1 354 Core Cell Cycle Gene Families AT5G06150 55.8 1.6e-81 300.1
Vvi3g202 . 155 322 Core Cell Cycle Gene Families AT5G06150 52.4 2.2e-43 173.3
Vvi8g490 . 1 407 Core Cell Cycle Gene Families AT3G11520 53.4 2.1e-101 366.3
Vvi13g75 . 5 413 Core Cell Cycle Gene Families AT3G11520 52.3 1.5e-96 350.1
Vvi3g202 . 156 381 Core Cell Cycle Gene Families AT3G11520 51.8 8.8e-60 228.0
Vvi6g928 . 108 448 Core Cell Cycle Gene Families AT2G26760 55.7 4.3e-99 358.6
Vvi8g490 . 155 444 Core Cell Cycle Gene Families AT2G26760 61.6 2.8e-98 355.9
Vvi18g1101 ECH 38 438 Core Cell Cycle Gene Families AT2G17620 57.9 1.3e-120 430.3
Vvi3g202 . 28 424 Core Cell Cycle Gene Families AT2G17620 54.7 2.1e-110 396.4
Vvi8g490 . 180 453 Core Cell Cycle Gene Families AT2G17620 50.2 8.3e-67 251.5
Vvi18g1101 ECH 37 393 Core Cell Cycle Gene Families AT4G35620 57.8 1.9e-102 369.8
Vvi3g202 . 28 381 Core Cell Cycle Gene Families AT4G35620 56.5 2.9e-95 345.9
Vvi8g490 . 180 407 Core Cell Cycle Gene Families AT4G35620 53.3 9.6e-59 224.6
Vvi19g1155 . 344 559 Core Cell Cycle Gene Families AT4G35620 51.4 6.0e-53 205.3
Vvi18g1101 ECH 1 436 Core Cell Cycle Gene Families AT1G20610 63.6 2.9e-144 508.8
Vvi3g202 . 38 425 Core Cell Cycle Gene Families AT1G20610 60.3 3.4e-121 432.2
Vvi19g1155 . 341 585 Core Cell Cycle Gene Families AT1G20610 51.4 5.2e-61 232.3
Vvi18g1101 ECH 1 333 Core Cell Cycle Gene Families AT1G76310 64.5 6.0e-105 377.9
Vvi3g202 . 4 321 Core Cell Cycle Gene Families AT1G76310 56.8 3.1e-85 312.4
Vvi13g75 . 181 353 Core Cell Cycle Gene Families AT1G76310 53.7 7.0e-45 178.3
Vvi8g490 . 180 347 Core Cell Cycle Gene Families AT1G76310 54.7 2.7e-44 176.4
Vvi19g1155 . 341 500 Core Cell Cycle Gene Families AT1G76310 55.3 8.9e-40 161.4
Vvi1g779 . 1 319 Core Cell Cycle Gene Families AT1G70210 64.2 9.6e-111 397.1
Vvi3g609 ECH 61 335 Core Cell Cycle Gene Families AT4G34160 56.7 1.9e-83 306.6
Vvi7g1011 ECH 19 272 Core Cell Cycle Gene Families AT4G34160 58.8 5.9e-77 285.0
Vvi3g609 ECH 63 363 Core Cell Cycle Gene Families AT5G67260 53.4 2.8e-85 312.8
Vvi7g1011 ECH 27 299 Core Cell Cycle Gene Families AT5G67260 55.9 6.8e-79 291.6
Vvi3g609 ECH 61 375 Core Cell Cycle Gene Families AT3G50070 53.5 5.5e-88 321.6
Vvi7g1011 ECH 1 310 Core Cell Cycle Gene Families AT3G50070 50.1 9.3e-88 320.9
Vvi18g483 . 64 269 Core Cell Cycle Gene Families AT5G65420 59.6 8.9e-67 250.8
Vvi18g483 . 57 238 Core Cell Cycle Gene Families AT5G10440 57.9 7.1e-54 207.6
Vvi12g600 . 1 291 Core Cell Cycle Gene Families AT4G03270 51.6 1.3e-66 250.4
Vvi14g219 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.9 6.3e-106 380.9
Vvi6g1113 . 1 86 Core Cell Cycle Gene Families AT2G27960 93.0 1.7e-43 171.8
Vvi6g1113 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 2.4e-39 157.9
Vvi4g234 . 13 1007 Core Cell Cycle Gene Families AT3G12280 69.9 0.0e+00 1334.3
Vvi14g1069 . 1 582 Core Cell Cycle Gene Families AT3G12280 53.8 3.7e-166 582.8
Vvi7g253 . 1 445 Core Cell Cycle Gene Families AT1G02970 62.3 6.7e-161 564.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76407 PF00069 Pkinase 2.00E-68 CL0016 Vvi PK