Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18randomg206 ATGGGGTGCATTTGCTCAAAGGAAGCCTCCGTTGATGAATATGTGGATTATAATGAGAGAGAGAAGGAGAAAGGGAAAGAGTTGAATAAGGATTCAGTGCAGTTGGTTGCCCCCTCCACGGGAGAGGAGCCAACTAAGGCTTCTCATCAAAGAAGGTTGACATTAGATATGGAAAACAACGTAGGGCCATCACCAATGTCTCGTATAGTTAGCATGCCCAATGGTGCCAAAGGAGAACAGATTGTCGCTGGATGGCCATCATGGTTATCTTCGGTTGCTGGAGAAGCCATCCAAGGGTGGGTGCCTCTAAGGCCCGAGTCATATGAGAAGTTAGACAAAATTGGACAAGGAACTTACAGCACTGTATATAGGGCCCGTGACCTTGACAGTGGTAAGATTGTGGCATTGAAGAAAGTGCGATTTGGTAATATGGATCCAGAAAGTGTTCGTTTTATGGCTAGAGAAATCCATGTTCTGCGTAAACTTGACCACCCAAATGTTATGAAGCTTGAGGGCCTAATCACTTCGAGGACATCAGGTACCTTGTACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGGCTTTCTGCAACACCTGGTATCAAGTTCACTGAACCACAGATTAAGTGTTACATGCAACAACTACTTCGTGGACTTGAGCACTGCCATAGTCGGGGTGTTCTGCATCGAGACATCAAGGGTTCAAATCTTCTAATTGACAATAAAGGAGTCCTCAAAATTGGAGACTTTGGTCTGGCAAGCTTTAGGTCTGATCCAAGTCAACCATTAACTAGTCGTGTTGTAACTCTGTGGTACAGACCTCCTGAGCTTTTGCTCGGTGCTACCAAGTATGGAGCTTCTGTGGATCTATGGAGCACTGGTTGTATCATTGCAGAACTGTTTGCTGGGAGTCCTATCATGCCTGGAAGTACGGAGGTGGAGCAAATTCATAAAATCTTTAAGCTTTGTGGTTCACCCTCTGAGGAATACTGGCAGAAATCAAAATTGGCACATGCATCCAGTTTCAAACCTCAACATCCTTACAAGCGCCGCCTAGCTGAGACATTCAGAAATTTCCCTTCTTCAGCTTTGGCTCTCGTTGATGTGCTTCTTTCAGTAGAGCCAGATGCAAGGGGAACAGCTGCTTCTGCACTCAAAAGTGAGTTCTTTACAACAAAGCCCCTCCCTTGTGATCCATCAAGTTTGCCAAAATATGTTCCAAGCAAAGAATACGATGCCAAGCTCCGAAATGAGGAAGCAAGAAGGCAAAGGGCAGAGGCTGTAAAAGGACGTGGAGCTGAATCTGTTAGAAGGGGTTCAAGACAATCCAAGGATGTGCCAACACCAGAATTTAAGCCTCAGGCACAAGCCTCTTTGCAGACAAACACAAAATGCATCAGTGAAAAATACAAACCTGGAGAGGATAGTGGGTCCAACTTTCGGATGGAACCTCATAGAGGAACTGTGCCAAATGGTTTGTCTCATTCTACTTTGATGATTAACCAAAATGCCGTTGGATCATCAGAGAAGAAGGTTGAGGATGAGGCCCAATTGGGTTATGGAAATACATTTGACTCTTCAAGAAATAAAGTAGAATTGAGGACCCATGGATCTCACATGCCTCATGGAGCAGCAGGTGTGTCAAACTCCTCTCATAGGAAGGACGAAAGGATCTCTGGCAAGGAATCTGTTACCGGCTATGTACCCAAGAAAAACAGGATGCACTACTCTGGACCACTGATGCCGTCTGGAGGGAACATTGAAGAAATGCTCAAAGACCATGAGAGACAGATCCAAGAGGCTGTCCGCAAAGCACGAATTGACAAGACCCAACAAAAACTGTGA 1848 45.18 MGCICSKEASVDEYVDYNEREKEKGKELNKDSVQLVAPSTGEEPTKASHQRRLTLDMENNVGPSPMSRIVSMPNGAKGEQIVAGWPSWLSSVAGEAIQGWVPLRPESYEKLDKIGQGTYSTVYRARDLDSGKIVALKKVRFGNMDPESVRFMAREIHVLRKLDHPNVMKLEGLITSRTSGTLYLVFEYMEHDLAGLSATPGIKFTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNKGVLKIGDFGLASFRSDPSQPLTSRVVTLWYRPPELLLGATKYGASVDLWSTGCIIAELFAGSPIMPGSTEVEQIHKIFKLCGSPSEEYWQKSKLAHASSFKPQHPYKRRLAETFRNFPSSALALVDVLLSVEPDARGTAASALKSEFFTTKPLPCDPSSLPKYVPSKEYDAKLRNEEARRQRAEAVKGRGAESVRRGSRQSKDVPTPEFKPQAQASLQTNTKCISEKYKPGEDSGSNFRMEPHRGTVPNGLSHSTLMINQNAVGSSEKKVEDEAQLGYGNTFDSSRNKVELRTHGSHMPHGAAGVSNSSHRKDERISGKESVTGYVPKKNRMHYSGPLMPSGGNIEEMLKDHERQIQEAVRKARIDKTQQKL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 537 587 - -
Vvi18randomg206 615 Coils Coil 409 429 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 415 495 - -
Vvi18randomg206 615 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vvi18randomg206 615 PANTHER OS02G0559300 PROTEIN 56 538 - -
Vvi18randomg206 615 Coils Coil 592 612 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 448 468 - -
Vvi18randomg206 615 ProSiteProfiles Protein kinase domain profile. 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18randomg206 615 Pfam Protein kinase domain 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18randomg206 615 SMART serkin_6 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18randomg206 615 Gene3D Phosphorylase Kinase; domain 1 104 195 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 415 446 - -
Vvi18randomg206 615 SUPERFAMILY Protein kinase-like (PK-like) 102 399 IPR011009 -
Vvi18randomg206 615 PANTHER CELL DIVISION PROTEIN KINASE 56 538 - -
Vvi18randomg206 615 MobiDBLite consensus disorder prediction 21 48 - -
Vvi18randomg206 615 Gene3D Transferase(Phosphotransferase) domain 1 196 431 - -
Vvi18randomg206 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vvi18randomg206 615 CDD STKc_CDK9_like 108 391 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76407 PF00069 Pkinase 2.00E-68 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18randomg206 K08819 - vvi:100265500 1193.72