Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18randomg62 ATGACGGGACATACTGCGGCGGCAGGATTCGCCAATGCGTCTCTGTACGTGGGCGATCTCGACACTGCCATCGGCGAAGGACAACTGTACGATCTGTTCCAGCAGGTTGCGCCGGTGTTGTCCATTAGGGTTTGTAGGGATCAGGCGAGGCGGGCCTCCCTTGGCTATGCGTACGTGAATTTCGCAAGCCCTCAGGATGCTACTAATGCTTTGGAGCATTTGAATTTCACACCTCTCAATGGGAAACCTATCAGGATTATGTTCTCTCATCGTGATCCTAGTATTCGAAAAAGTGGCTTTGCCAATGTTTTTATTAAAAACTTGGACCCCTCAATAGATAACAAGGCATTGCTTGATACATTTGCTGCCTTTGGCACTGTACTCTCTTGCAAAATAGCCCTTGACAACAATGGTCAATCCAAAGGATATGGATTTGTACAGTTTGAGCAGGAGGAGGCTGCCCAAAATGCAATCAAACGGTTGAATGGCATGTTAATAAATGATAAACAAGTTTATGTTGGACTTTTCGTTCGTCACCAAGAAAGGAACCGAGGAAATGGTTCACCAAAGTTTACTAATGTGTATGTGAAAAATTTGTCTGAAACAACCACTGATGATGACCTTAAAAACATTTTTGGAAAGTATGGTTCCATCACTAGTGCTGTTGTTATGAGGGATGCAAGTGGGATGTCCAAATGTTTTGGTTTTGTAAACTTCCAGAGCTCAGATTCTGCTGCTGCTGCAGTTGAGCATCTGAATGGTGCCACTTTCAATGATGACAAGGTCTGGTACGTGGGGAAGGCTCAAAGGAAATCAGAGAGGGAGGCTGAGTTGAGAGCAAAATTTGAACAGGAAAGAAAGAATAAATTTGAAAAATTTAAAGGCACTAATTTGTATCTGAAAAATCTTGATGATAGCGTAAATGATGAAAAACTGAAAGAGCTATTTTCTGAGTTTGGAACTATTACGTCATGCAAGGTCATGCTAGATCCACAAGGGCTCAGCAAAGGCTCTGGTTTTGTTGCCTTTTTAACCCCTGAGGAAGCTACAAGAGCTTTAAATGTGATGAATGGAAAGATGATTGGGCGCAAACCTCTGTATGTAGCTGTGGCCCAACGGAAAGAGGAAAGGAAGGCCCGCCTGCAGGCGCAATTTGCTCAAATCCGATCACCTGGGGCAATGACACCCTTGCAATCTGGAGTGCCTGGATTTCATTCTGGGGCACCTAGACTTGCCCCTCAGCAGCTCTATTTTGGTCAAGGTACTCCTGGTCTAATACCCACTCAGCCAGCAGGGTATGGATTCCAGCAGCAACTCATGCCTGGAATGCGGCCTGGTGTTGCACCGAACTTCATTATGCCATACCAGCTTCAGAGGCAAGGACAGCCTGGACAACGGATGGGTGTAAGGAGAGGTGGGAACTCCCAACAGATGCAGCATCAGCAACAGCCATTGCTGCACCGAAACTCCAATCAAAGCTATCGGTACATGGCAAATGGACGGAATGGAGTGGACCCATCCATGGTTCCTCAAGGCCTCATGGGGCCAGTGATGCCATTACCTTTTGATGTTTCTGGGATGCCTGTTTCTCCTATGGACATTCAGCGAACTGGGCCAGTGCCTATGTCAACACTTGCATCTGCTCTTGCTTCTACTACCCCCGATAACCAGCGACTGATGTTGGGTGAACAGTTGTTTCCTCTTGTGGAGCGTATTGAACGTGAAACTGCAGGAAAAGTGACTGGGATGTTGCTAGAGATGGACCAAACAGAGGTGCTCCATCTCATTGAGTCTCCTGATGCTCTGAAGAACAAAGTGGCTGAGGCTATGGATGTCCTTCGTGCATCTTCATCAGGAAATGATGTTGGTGATCAGCTTGGCTCGTTGATGCTCAATGAATGA 1902 46.37 MTGHTAAAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQPLLHRNSNQSYRYMANGRNGVDPSMVPQGLMGPVMPLPFDVSGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLRASSSGNDVGDQLGSLMLNE* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18randomg62 633 SMART poly_2 553 616 IPR002004 GO:0003723
Vvi18randomg62 633 Gene3D - 538 618 - -
Vvi18randomg62 633 Gene3D - 95 181 IPR012677 -
Vvi18randomg62 633 CDD RRM2_I_PABPs 99 174 IPR045305 -
Vvi18randomg62 633 Gene3D - 5 94 IPR012677 -
Vvi18randomg62 633 Coils Coil 268 288 - -
Vvi18randomg62 633 SUPERFAMILY RNA-binding domain, RBD 102 271 IPR035979 GO:0003676
Vvi18randomg62 633 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 614 IPR006515 GO:0003723
Vvi18randomg62 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Vvi18randomg62 633 PANTHER RNA BINDING PROTEIN 10 619 - -
Vvi18randomg62 633 SMART rrm2_1 297 369 IPR003954 GO:0003676
Vvi18randomg62 633 SMART rrm2_1 102 174 IPR003954 GO:0003676
Vvi18randomg62 633 SMART rrm2_1 193 265 IPR003954 GO:0003676
Vvi18randomg62 633 CDD RRM3_I_PABPs 191 271 - -
Vvi18randomg62 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Vvi18randomg62 633 CDD RRM1_I_PABPs 14 93 - -
Vvi18randomg62 633 SUPERFAMILY PABC (PABP) domain 476 616 IPR036053 GO:0003723
Vvi18randomg62 633 SMART rrm1_1 14 87 IPR000504 GO:0003723
Vvi18randomg62 633 SMART rrm1_1 297 369 IPR000504 GO:0003723
Vvi18randomg62 633 SMART rrm1_1 102 174 IPR000504 GO:0003723
Vvi18randomg62 633 SMART rrm1_1 193 266 IPR000504 GO:0003723
Vvi18randomg62 633 SUPERFAMILY RNA-binding domain, RBD 11 97 IPR035979 GO:0003676
Vvi18randomg62 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Vvi18randomg62 633 Gene3D - 182 280 IPR012677 -
Vvi18randomg62 633 Gene3D - 281 385 IPR012677 -
Vvi18randomg62 633 Pfam Poly-adenylate binding protein, unique domain 549 613 IPR002004 GO:0003723
Vvi18randomg62 633 PANTHER POLYADENYLATE-BINDING PROTEIN 10 619 - -
Vvi18randomg62 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Vvi18randomg62 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 366 IPR000504 GO:0003723
Vvi18randomg62 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Vvi18randomg62 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 261 IPR000504 GO:0003723
Vvi18randomg62 633 SUPERFAMILY RNA-binding domain, RBD 293 389 IPR035979 GO:0003676
Vvi18randomg62 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 618 IPR002004 GO:0003723
Vvi18randomg62 633 CDD RRM4_I_PABPs 295 373 - -
Vvi18randomg62 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18randomg62 K13126 - vvi:100263065 1251.5