Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18randomg62 | ATGACGGGACATACTGCGGCGGCAGGATTCGCCAATGCGTCTCTGTACGTGGGCGATCTCGACACTGCCATCGGCGAAGGACAACTGTACGATCTGTTCCAGCAGGTTGCGCCGGTGTTGTCCATTAGGGTTTGTAGGGATCAGGCGAGGCGGGCCTCCCTTGGCTATGCGTACGTGAATTTCGCAAGCCCTCAGGATGCTACTAATGCTTTGGAGCATTTGAATTTCACACCTCTCAATGGGAAACCTATCAGGATTATGTTCTCTCATCGTGATCCTAGTATTCGAAAAAGTGGCTTTGCCAATGTTTTTATTAAAAACTTGGACCCCTCAATAGATAACAAGGCATTGCTTGATACATTTGCTGCCTTTGGCACTGTACTCTCTTGCAAAATAGCCCTTGACAACAATGGTCAATCCAAAGGATATGGATTTGTACAGTTTGAGCAGGAGGAGGCTGCCCAAAATGCAATCAAACGGTTGAATGGCATGTTAATAAATGATAAACAAGTTTATGTTGGACTTTTCGTTCGTCACCAAGAAAGGAACCGAGGAAATGGTTCACCAAAGTTTACTAATGTGTATGTGAAAAATTTGTCTGAAACAACCACTGATGATGACCTTAAAAACATTTTTGGAAAGTATGGTTCCATCACTAGTGCTGTTGTTATGAGGGATGCAAGTGGGATGTCCAAATGTTTTGGTTTTGTAAACTTCCAGAGCTCAGATTCTGCTGCTGCTGCAGTTGAGCATCTGAATGGTGCCACTTTCAATGATGACAAGGTCTGGTACGTGGGGAAGGCTCAAAGGAAATCAGAGAGGGAGGCTGAGTTGAGAGCAAAATTTGAACAGGAAAGAAAGAATAAATTTGAAAAATTTAAAGGCACTAATTTGTATCTGAAAAATCTTGATGATAGCGTAAATGATGAAAAACTGAAAGAGCTATTTTCTGAGTTTGGAACTATTACGTCATGCAAGGTCATGCTAGATCCACAAGGGCTCAGCAAAGGCTCTGGTTTTGTTGCCTTTTTAACCCCTGAGGAAGCTACAAGAGCTTTAAATGTGATGAATGGAAAGATGATTGGGCGCAAACCTCTGTATGTAGCTGTGGCCCAACGGAAAGAGGAAAGGAAGGCCCGCCTGCAGGCGCAATTTGCTCAAATCCGATCACCTGGGGCAATGACACCCTTGCAATCTGGAGTGCCTGGATTTCATTCTGGGGCACCTAGACTTGCCCCTCAGCAGCTCTATTTTGGTCAAGGTACTCCTGGTCTAATACCCACTCAGCCAGCAGGGTATGGATTCCAGCAGCAACTCATGCCTGGAATGCGGCCTGGTGTTGCACCGAACTTCATTATGCCATACCAGCTTCAGAGGCAAGGACAGCCTGGACAACGGATGGGTGTAAGGAGAGGTGGGAACTCCCAACAGATGCAGCATCAGCAACAGCCATTGCTGCACCGAAACTCCAATCAAAGCTATCGGTACATGGCAAATGGACGGAATGGAGTGGACCCATCCATGGTTCCTCAAGGCCTCATGGGGCCAGTGATGCCATTACCTTTTGATGTTTCTGGGATGCCTGTTTCTCCTATGGACATTCAGCGAACTGGGCCAGTGCCTATGTCAACACTTGCATCTGCTCTTGCTTCTACTACCCCCGATAACCAGCGACTGATGTTGGGTGAACAGTTGTTTCCTCTTGTGGAGCGTATTGAACGTGAAACTGCAGGAAAAGTGACTGGGATGTTGCTAGAGATGGACCAAACAGAGGTGCTCCATCTCATTGAGTCTCCTGATGCTCTGAAGAACAAAGTGGCTGAGGCTATGGATGTCCTTCGTGCATCTTCATCAGGAAATGATGTTGGTGATCAGCTTGGCTCGTTGATGCTCAATGAATGA | 1902 | 46.37 | MTGHTAAAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQPLLHRNSNQSYRYMANGRNGVDPSMVPQGLMGPVMPLPFDVSGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLRASSSGNDVGDQLGSLMLNE* | 634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18randomg62 | 633 | SMART | poly_2 | 553 | 616 | IPR002004 | GO:0003723 | |
Vvi18randomg62 | 633 | Gene3D | - | 538 | 618 | - | - | |
Vvi18randomg62 | 633 | Gene3D | - | 95 | 181 | IPR012677 | - | |
Vvi18randomg62 | 633 | CDD | RRM2_I_PABPs | 99 | 174 | IPR045305 | - | |
Vvi18randomg62 | 633 | Gene3D | - | 5 | 94 | IPR012677 | - | |
Vvi18randomg62 | 633 | Coils | Coil | 268 | 288 | - | - | |
Vvi18randomg62 | 633 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 271 | IPR035979 | GO:0003676 | |
Vvi18randomg62 | 633 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 13 | 614 | IPR006515 | GO:0003723 | |
Vvi18randomg62 | 633 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 270 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | PANTHER | RNA BINDING PROTEIN | 10 | 619 | - | - | |
Vvi18randomg62 | 633 | SMART | rrm2_1 | 297 | 369 | IPR003954 | GO:0003676 | |
Vvi18randomg62 | 633 | SMART | rrm2_1 | 102 | 174 | IPR003954 | GO:0003676 | |
Vvi18randomg62 | 633 | SMART | rrm2_1 | 193 | 265 | IPR003954 | GO:0003676 | |
Vvi18randomg62 | 633 | CDD | RRM3_I_PABPs | 191 | 271 | - | - | |
Vvi18randomg62 | 633 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 296 | 373 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | CDD | RRM1_I_PABPs | 14 | 93 | - | - | |
Vvi18randomg62 | 633 | SUPERFAMILY | PABC (PABP) domain | 476 | 616 | IPR036053 | GO:0003723 | |
Vvi18randomg62 | 633 | SMART | rrm1_1 | 14 | 87 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | SMART | rrm1_1 | 297 | 369 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | SMART | rrm1_1 | 102 | 174 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | SMART | rrm1_1 | 193 | 266 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | SUPERFAMILY | RNA-binding domain, RBD | 11 | 97 | IPR035979 | GO:0003676 | |
Vvi18randomg62 | 633 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 91 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | Gene3D | - | 182 | 280 | IPR012677 | - | |
Vvi18randomg62 | 633 | Gene3D | - | 281 | 385 | IPR012677 | - | |
Vvi18randomg62 | 633 | Pfam | Poly-adenylate binding protein, unique domain | 549 | 613 | IPR002004 | GO:0003723 | |
Vvi18randomg62 | 633 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 10 | 619 | - | - | |
Vvi18randomg62 | 633 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 85 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 298 | 366 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 103 | 171 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 194 | 261 | IPR000504 | GO:0003723 | |
Vvi18randomg62 | 633 | SUPERFAMILY | RNA-binding domain, RBD | 293 | 389 | IPR035979 | GO:0003676 | |
Vvi18randomg62 | 633 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 541 | 618 | IPR002004 | GO:0003723 | |
Vvi18randomg62 | 633 | CDD | RRM4_I_PABPs | 295 | 373 | - | - | |
Vvi18randomg62 | 633 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 101 | 178 | IPR000504 | GO:0003723 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18randomg62 | K13126 | - | vvi:100263065 | 1251.5 |