Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1 ATGCCGTTGCCATTTCTGAAAATAGGGACAGGAAAATTCAACATGAAGGAAGGGGTAGCAAGAGAAATTGTGAAAGCGGCATTTATTTATTTTGATTCATTCCATACCCCTTTTATTTCAACCGCCACTGGCTGTTGTTGCAAAATAATTCATCTTGTGCCGGATCGGCCATGCACCATTGGCAGGAGCCACCAGTCTTGTGACTACGTGCTTGAGGACCGTCGAGTTAGTAAGCAGCACTGTCAGATACTCTTTGATGGCTTTCACCGCAAGATTTTCATATTGGACGGAGGAAGATTTAGGACAAAAGGAGATCTTGATAAACTGGAAGAGACAGCGGTTAGGCCTTCTCTGAATGGGATTTTTCTCAATGGGTTTAAGATAGGAAAGGACACCCTCAAAGAGTTGTCTGCTGGAGACGAGGTTTCATTTGTTTGTCAAAATGAACGTCTTGCTGGGTTTCTTATCCAAAGGATTGTTTTTACAGAGGAGGCTCTGGAGGGGAGAGGGGAAGCAGCATCCTCGGGCCCAATTAATCCTTCTCCTACATCTGAAAGTGATGACCTTATAACTAGGAGAGCAAACTTCTATTTAGGTCAGTGCAGATGCATATTGAATAGTGATGACCCAATCTCTTATATTCGAGGATTTGTTACTTCATATAGTGAAATTCAAGGCCTATGTTCTTGCAGCAGCAGACTGAACAATTTTCCGAGCTTTCTATTAAGCACTGATGCTAAATTGTCTCCCGTTCTCAAGGGAATCCCATGGCCCAGCCAGGGCTTGCAAAATGTTGAGAGTTCTGAAAATATAAGGGCCAACAGGCTACAATTGAATTCTATTTTCCTTAACAGGCAATCAGTACTAGTTTCTGATGCTAAACCTAAGACTCTGTCCTCGAATTCTATGGGCAAGGAGAATGATCAACAATTTCATGGTGTTATGCATAATAAAACTTGGGGCACATCTTGTCCCCCACCTGGAAAGAAGTTTTATCTAAATCGCCTTGAATTCATGAATTATAGTTCATCTGGTAATCATACTGTCATTTCTTTGCCAGAGCTTCTTTTTCCTGTTGAAAACCTTTCACGGATATTTGTTGCGACATTTACAAGCGATGTTTTATGGTTTTTATCATATTGCAAGGTTCCTGGACATCTGCCTGTCACAATTGCATGTCATCACACTGAAAGATGTTGGAGTTCAAGTGCTGACAAAAGGGCATATGTGCCTTACTCTGATTATCCAAACTTGGTCATTGTGCATCCTCCTTTTCCTGAGGCCATTGCCTTTGGTAGAGACCGCAAGAAATTAGGTGTTGCTTGCCATCACCCAAAGTTGCTTGTTTTGCAAAGAGAAGATAGTATTCGTATCATCATTACTTCTGCAAACTTAGTGGCAAAACAGTGGAACAGTGTGACCAATACCGTTTGGTGGCAAGATTTCCCCCGGATAAGTCCGCCTGATTATTCCTCTATTTTTACTCAATTTTGTGATGGAGAAATAAATCTAGATTCAAGATCAGATTTTGCTGCTCAGCTGGCTGGATTTATGGCATCTCTTGTGATTGATGTGCCCAGTCAGGCCCATTGGATTATGGAGTTGACTAAGTATGATTTTAAAGGGGCTACTGGACACCTGGTTGCTTCAGTACCTGGAATTCATTTCCATAGAACTCCCCATGCATCAAAATCTATGCAATTCTTACATGCTAATCAGAATGCATCATGTTCATTTGCAGATGCAAATGGTGCACATCTCAAGAAATTGGCTGCTTTCCTTGGGAAGTGCCACAAAAATGAATATGGAATGTCAGAGATTGTTTTAAGAAGAAATAGTAACATACCTGCAGATTCAAATGCTGTAAGCATTCTTGTTCCTGAACCAGTTGAGCATTCTGAAGGAGATTGCATTCAACTTGGGTTTTTGCCTAGAGATGTTGCGAAGTGGGTTTCTCCTTTATGGGATAGTGGCTTCTTCAGATTCTCTGGATATGTTTGTCCTATGGAAGCTCTTGCAGTTGCCTTAGGGGGTAAAACCCACAAAGTACAATTGATACTGTATGTATCACAGGGAGCTAGCTTTTCATATATATTAAAGATGATGCAACCAGAACATCTTTCTGCAATCTGCTCTCTTGTTGCATCACTAAAGAGGTGTGTAGGCCTCTGGCGACTACAAGAGATTTTAGGTGGATACCAATGGCCTGAATCACAAGAAACTGATTTCATTTATGGTTCATCCTCAATTGGATCATCAATCAATGCACAATTTCTAGCTGCATTTTCTGCAGCTGCTGGAAAGAGGTCATTGCAATTCTTTGAATCTGACGAGTCTGATCCAGAGTGGGGTTGCTGGAGTGCTAGTCAAGAATCAAGAAGTCCATCCATTAAAATTGTTTTCCCCACTATTGAAAGAGTAAAAAATTCAAGTTGTGGAATCTTGCCTTCAAGACGCATACTTTGCTTCTCAGAGAAAACATGGCAACGGTTGAAGAATGTAAGCACAATTCATGATGCAATTCCTCATCCCAGTGATAGAGTGAAGCATCCAATGCATGTCAAGGTGGCACAAAGACGCTTTCAGTCAAAAATGGATTCATCTTCCTTTGGGTGGGTCTATTGTGGGTCACATAACTTCAGTGCAGCTGCTTGGGGACGTCCAATTTCCAATCCTTTTGGAATAAAAACAACTGGAACTCACAAAGCTGACTCTTGCTTCGATCAGAGGCTTCACATTTGTAACTATGAACTTGGGATCATTTTCATTTTCCCCCCATCAGCTACAAAAGGTAACGGCAACCAAAGTAGTACAAACTTGGATGATGTAGTTTTGCCGTTTGTCATGCCTGCCCCAAAATATGGCCCCAGAGATAGACCTGCAACAACTCAAGCCATGACAGAGGCATTAGCTGAACTTACTGAGCAAGAGCATGAAAAACTTGTAGCAGCAACAAATACTGAAGAAATGATAGAAGAGGAGCTCCCAGATGAGGAAGAGGCGGTAGAGGTAACTGACCATGTTGCAGAGGAGAAGGAAGAAGAGAAGGCTTATGCTGAGCTGCTGTGGAGTCAGGTTGATTCATCTCAAAGCTGTTGA 3099 41.79 MPLPFLKIGTGKFNMKEGVAREIVKAAFIYFDSFHTPFISTATGCCCKIIHLVPDRPCTIGRSHQSCDYVLEDRRVSKQHCQILFDGFHRKIFILDGGRFRTKGDLDKLEETAVRPSLNGIFLNGFKIGKDTLKELSAGDEVSFVCQNERLAGFLIQRIVFTEEALEGRGEAASSGPINPSPTSESDDLITRRANFYLGQCRCILNSDDPISYIRGFVTSYSEIQGLCSCSSRLNNFPSFLLSTDAKLSPVLKGIPWPSQGLQNVESSENIRANRLQLNSIFLNRQSVLVSDAKPKTLSSNSMGKENDQQFHGVMHNKTWGTSCPPPGKKFYLNRLEFMNYSSSGNHTVISLPELLFPVENLSRIFVATFTSDVLWFLSYCKVPGHLPVTIACHHTERCWSSSADKRAYVPYSDYPNLVIVHPPFPEAIAFGRDRKKLGVACHHPKLLVLQREDSIRIIITSANLVAKQWNSVTNTVWWQDFPRISPPDYSSIFTQFCDGEINLDSRSDFAAQLAGFMASLVIDVPSQAHWIMELTKYDFKGATGHLVASVPGIHFHRTPHASKSMQFLHANQNASCSFADANGAHLKKLAAFLGKCHKNEYGMSEIVLRRNSNIPADSNAVSILVPEPVEHSEGDCIQLGFLPRDVAKWVSPLWDSGFFRFSGYVCPMEALAVALGGKTHKVQLILYVSQGASFSYILKMMQPEHLSAICSLVASLKRCVGLWRLQEILGGYQWPESQETDFIYGSSSIGSSINAQFLAAFSAAAGKRSLQFFESDESDPEWGCWSASQESRSPSIKIVFPTIERVKNSSCGILPSRRILCFSEKTWQRLKNVSTIHDAIPHPSDRVKHPMHVKVAQRRFQSKMDSSSFGWVYCGSHNFSAAAWGRPISNPFGIKTTGTHKADSCFDQRLHICNYELGIIFIFPPSATKGNGNQSSTNLDDVVLPFVMPAPKYGPRDRPATTQAMTEALAELTEQEHEKLVAATNTEEMIEEELPDEEEAVEVTDHVAEEKEEEKAYAELLWSQVDSSQSC* 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1175 19554 + Vvi19g1 Vvi19g1 781500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1 1032 Gene3D - 585 695 - -
Vvi19g1 1032 PANTHER OS04G0403400 PROTEIN 21 1031 - -
Vvi19g1 1032 ProSiteProfiles Forkhead-associated (FHA) domain profile. 58 128 IPR000253 GO:0005515
Vvi19g1 1032 SUPERFAMILY Phospholipase D/nuclease 712 973 - -
Vvi19g1 1032 Pfam FHA domain 58 144 IPR000253 GO:0005515
Vvi19g1 1032 SUPERFAMILY Phospholipase D/nuclease 326 542 - -
Vvi19g1 1032 SUPERFAMILY SMAD/FHA domain 46 159 IPR008984 GO:0005515
Vvi19g1 1032 Gene3D - 40 175 - -
Vvi19g1 1032 Gene3D Endonuclease Chain A 325 542 - -
Vvi19g1 1032 Gene3D Endonuclease Chain A 710 966 - -
Vvi19g1 1032 Pfam Tyrosyl-DNA phosphodiesterase 720 955 IPR010347 GO:0005634|GO:0006281|GO:0008081
Vvi19g1 1032 Pfam Tyrosyl-DNA phosphodiesterase 331 558 IPR010347 GO:0005634|GO:0006281|GO:0008081
Vvi19g1 1032 CDD FHA 39 144 IPR000253 GO:0005515
Vvi19g1 1032 CDD PLDc_Tdp1_2 723 922 - -
Vvi19g1 1032 CDD PLDc_Tdp1_1 350 517 - -
Vvi19g1 1032 SMART FHA_2 57 128 IPR000253 GO:0005515
Vvi19g1 1032 Pfam HIRAN domain 598 689 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi19g1 1032 PANTHER TYROSYL-DNA PHOSPHODIESTERASE 1 21 1031 IPR010347 GO:0005634|GO:0006281|GO:0008081
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1 - - - vvi:100243589 2001.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .