Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g10 ATGGGAAATGCTCGGATCATAGTGCTTTATATCACAGTATGTTGTATTGCTTTTGTTACATCAAAGGTCATCATCTCAGTCCTCCTGTATAAGAGATGGAAAAGAAAGCACTCGATTTACAAAGATAGCTTCTCAGGTGGGAAGATGGTGATGTTTACGTCTCCAATGATGCAATCTCTCAATTCCGATGCGTTGTTGAAGAAGGCAACAAGGTTGAGCAACAAAGATGTCATTGGGTCTGGAGGCCATGGTACTGTCTATAGACTGACAGTAGATGGCTCCGTAGCCTTTGCTGTAAAAAGACTAAACAGGGGAAGTGCAGATCAGGATCGAGGCTTTGAGCGAGAGTTGGAGGCCATGGGAGACATAAAGCACCGAAATATTGTAACCCTTCATGGATATTACACTGCCCCTCATTATAATCTTCTCATATATGAGCTAATGCCTAATGGGAGTTTGGATGCCTACCTCCATGGAAGACTGAAAGAAAAGAAGCTCCTGGATTGGCCTTCAAGATACAAAATAGCAGTAGGTGCTGCAAGAGGAATTGCATACCTTCATCATGATTGCATCCCACACATAATCCACAGAGATATCAAGTCTAGTAACATATTACTGGATCAGAACATGGAGGCTAGAGTCTCAGACTTTGGACTAGCAACGTTAATGGAACCAGATAAGACTCACGTTTCAACATTTGTAGCCGGGACTTTTGGATACTTGGCTCCAGAGTATTTTGACACAGGAAGAGCAACTGCAAAAGGGGATGTTTACAGCTTTGGTGTTGTTTTACTTGAGCTTTTAACAGGAAAAAGACCATCAGATGAAGCATTTATAGAGGAGGGAACCAGGCTTGTGACATGGGTGAAAGCCGTTGTTCTAGAGAAGAAGGAAGAGCATGTACTTGACAGCAGTTTAGAATGTTGTTCTCTTGATGAGGTTAACAATGTCTTCAGTATTGCTACAATGTGCCTTGAGTCAGAGCCCTCAAAGAGGCCTACCATGGCTGAGGTTCTCAAGATGCTTGAGCAAATAAAATCAGACAAACTTGTAAAAGAATCCTAA 1065 42.25 MGNARIIVLYITVCCIAFVTSKVIISVLLYKRWKRKHSIYKDSFSGGKMVMFTSPMMQSLNSDALLKKATRLSNKDVIGSGGHGTVYRLTVDGSVAFAVKRLNRGSADQDRGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDAYLHGRLKEKKLLDWPSRYKIAVGAARGIAYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPDKTHVSTFVAGTFGYLAPEYFDTGRATAKGDVYSFGVVLLELLTGKRPSDEAFIEEGTRLVTWVKAVVLEKKEEHVLDSSLECCSLDEVNNVFSIATMCLESEPSKRPTMAEVLKMLEQIKSDKLVKES* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 85757 88311 - Vvi19g10 Vvi19g10 781509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g10 354 PANTHER BNAA07G39120D PROTEIN 1 347 - -
Vvi19g10 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Vvi19g10 354 SUPERFAMILY Protein kinase-like (PK-like) 50 344 IPR011009 -
Vvi19g10 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi19g10 354 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Vvi19g10 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 347 - -
Vvi19g10 354 ProSiteProfiles Protein kinase domain profile. 72 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g10 354 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g10 354 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g10 354 Gene3D Phosphorylase Kinase; domain 1 54 147 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76409 PF00069 Pkinase 1.30E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g10 - - vvi:100257246 707.212