Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1004 ATGATGATCAAAAAAATTTTAAAATCTATAAGTAATGAAGATGTTGCAAGTTTGGATTTGAATGGTTCGAAAGATAAGCTTCATGAAAAAATAAGAGAAAAAAGGTTCTTGATAGTTCTTGATGATGTTTGGAACCAAAATTTTGAAAAATGGGATAAAGTGAGAATTTTGTTGATGGTCGGTGCTAAAGGGAGTAAAATTGTAGTGACCACCCGAAAAACTAAAGTTGCATCAATTATGGGAGATAGTTCTCCCTTTATTTTGAAAGGTTTGGAAGAAAATCAGTCTTGGAATTTATTTTCAAAAATTGCATTTAGAGAAAGACTAGAGAATGTGCATCCAAACATCATAGGAATCGGAAAAGAAATTGCAACAATGTGTAAGGGAGTTCCTCTTATCATTAAGACTTTAGGAACAATGTTGCAGTTTGAATCTGAAGAACGGAATTGGTTGTCTATTAAAAACAATGAAAATCTCTTATCACTTCAAGATGAAAATTATAATGTTTTACCTGTGCTAAAATTGAGTTATGATAATTTACCAACACATTTGAGGCAGTGTTTTTCATATTGTGCCTTATTTCCAAAAGACTACGAAATTAAGAAAAAGTTGTTGGTACAATTATGGACAGCGCAAGATTACATCCAATCTTCAAATGAGAATGAGCACTTAGAAGATGTAGGGGATCGATATTTTAAGGAATTGTGGTCAAGGTCATTGTTTCATGAAGTTGAAAGAGATGTTGTTAATGATATAGTAAGTTGTAAAATGCATGACCTTATACATGATCTTGCACAATCGATTATAGGATCTGAGGTCCTAATTTTAAAAGACAATATAAAGAACATTCCAGAAAAAGTTCGTCATATACTCTTATTTGAACAGGTGAGTCTTATGATAGGGAGTTTAAAGGAAAAACCCATAAGGACCTTTCTGAAGCTTTATGAAGATGATTTTAAAAATGATTCAATTGTAAATTCACTTATTCCAAGTTTGAAGTGTTTACATGTGCTGAGCTTGGATAGTTTCAGCATAAGGAAGGTACCAAAATATTTAGGTAAATTAAGTCATTTAAGGTATCTTGATCTTTCCTATAATGATTTTGAGGTGCTTCCAAATGCTATTACAAGGTTAAAGAATTTACAAACACTAAAACTCAATGATTGTTGTAATCTAAAAGAATTTCCAAAATTTACAAAGAAATTGATCAATTTGAGGCACTTGGAGAATGATAGGTGTGATAATTTGACTCATATGCCATGTGGAATAGGAGAGTTGACTTTGCTTCAAAGCTTACCATTATTCATTGTTGGCAATGGGAGAGAGTTCTCAAAGAACAAAAGAATTGGTAGGTTGAGTGAATTGAAAAGGCTTAGCCAATTAGGAGGAATATTGCAAATAAAAAATCTTCAAAATGAAAGGGATGTTCTACCAATATCCAAGGGAGAAATTTTGAAAGAAAAACAATACCTTCAATCCTTGAGATTAGAATGGAGATGGTGGGACCTAGAAGCTAAGTGGGATGAGAATGCTGAGTTAGTGATGGAAGGTCTCCAACCACACCTAAACTTAAAGGAGCTTTCTGTATATGGTTATGAAGGTAGGAAGTTTCCAAGTTGGATGATGAATGATGGGTTGGATTCCTTGCTTCCCAACCTATGTCACATTGAAATGTGGGATTGTTCAAGATGCCAAATTCTGCCACCCTTTTCTCAACTCCCTTTTCTCAAGTCTTTGGAGCTCTATAACATGAAAGAGGTGGAGGACATGAAGGAGAGTTCACCAGGAAAACCATTCTTCCCATCTCTTCAAATACTCAAATTCTATAAAATGCCAAAGTTGACGGGATTGTGGAGGATGGACATACTAGCAGAGCAAGGTCCTTCATTTCCTCATCTTTCAGAGGTATATATAGAGAAGTGCTCTAGTTTGACATCAGTTCGACTATCATCAAATTGCCCCAACTTGGCATCCTTCAAAGGGGCTTCATTACCTTGTCTTGGGAAACTAGCCCTGGATAGAATCAGAGAGGATGTATTACGACAGATAATGTCTGTCTCAGCTTCTTCTTCATTGAAGTCTCTGTATATTTTGAAGATAGATGGTATGATATCTCTCCCAGAGGAGTTGCTTCAACATGTTTCCACTCTCCATACTCTCAGCCTTCAGGGCTGCTCGAGTTTATCAACATTGCCACACTGGTTAGGCAACCTTACCTCACTTACACACCTTCAAATACTAGACTGTCGTGGCTTGGCAACATTACCACACTCCATAGGCAGTCTCACCTCACTTACAGACCTTCAAATATATAAATCTCCTGAGTTGGCATCACTGCCAGAAGAGATGCGCTCTCTCAAAAACCTTCAGACACTTAATATCTCTTTTTGTCCACGCTTAGAGGAAAGATGCCGACGGGAAACAGGTCAAGACTGGCCCAATATTGCTCATGTCACAGAAATTAACATTTACCCGCAATGA 2481 36.2 MMIKKILKSISNEDVASLDLNGSKDKLHEKIREKRFLIVLDDVWNQNFEKWDKVRILLMVGAKGSKIVVTTRKTKVASIMGDSSPFILKGLEENQSWNLFSKIAFRERLENVHPNIIGIGKEIATMCKGVPLIIKTLGTMLQFESEERNWLSIKNNENLLSLQDENYNVLPVLKLSYDNLPTHLRQCFSYCALFPKDYEIKKKLLVQLWTAQDYIQSSNENEHLEDVGDRYFKELWSRSLFHEVERDVVNDIVSCKMHDLIHDLAQSIIGSEVLILKDNIKNIPEKVRHILLFEQVSLMIGSLKEKPIRTFLKLYEDDFKNDSIVNSLIPSLKCLHVLSLDSFSIRKVPKYLGKLSHLRYLDLSYNDFEVLPNAITRLKNLQTLKLNDCCNLKEFPKFTKKLINLRHLENDRCDNLTHMPCGIGELTLLQSLPLFIVGNGREFSKNKRIGRLSELKRLSQLGGILQIKNLQNERDVLPISKGEILKEKQYLQSLRLEWRWWDLEAKWDENAELVMEGLQPHLNLKELSVYGYEGRKFPSWMMNDGLDSLLPNLCHIEMWDCSRCQILPPFSQLPFLKSLELYNMKEVEDMKESSPGKPFFPSLQILKFYKMPKLTGLWRMDILAEQGPSFPHLSEVYIEKCSSLTSVRLSSNCPNLASFKGASLPCLGKLALDRIREDVLRQIMSVSASSSLKSLYILKIDGMISLPEELLQHVSTLHTLSLQGCSSLSTLPHWLGNLTSLTHLQILDCRGLATLPHSIGSLTSLTDLQIYKSPELASLPEEMRSLKNLQTLNISFCPRLEERCRRETGQDWPNIAHVTEINIYPQ* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19813959 19816800 + Vvi19g1004 Vvi19g1004 782503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1004 826 Gene3D - 1 87 IPR027417 -
Vvi19g1004 826 PANTHER DISEASE RESISTANCE PROTEIN RP 25 688 IPR044974 GO:0006952
Vvi19g1004 826 PANTHER DISEASE RESISTANCE PROTEIN RP 698 795 IPR044974 GO:0006952
Vvi19g1004 826 ProSiteProfiles Leucine-rich repeat profile. 357 379 IPR001611 GO:0005515
Vvi19g1004 826 Gene3D Ribonuclease Inhibitor 649 808 IPR032675 -
Vvi19g1004 826 SUPERFAMILY L domain-like 256 666 - -
Vvi19g1004 826 Pfam NB-ARC domain 4 179 IPR002182 GO:0043531
Vvi19g1004 826 Gene3D Ribonuclease Inhibitor 276 623 IPR032675 -
Vvi19g1004 826 SUPERFAMILY RNI-like 600 802 - -
Vvi19g1004 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 191 IPR027417 -
Vvi19g1004 826 Gene3D - 90 176 IPR042197 -
Vvi19g1004 826 Pfam Leucine rich repeat 335 388 IPR001611 GO:0005515
Vvi19g1004 826 Gene3D - 177 267 IPR036388 -
Vvi19g1004 826 PRINTS Disease resistance protein signature 30 44 - -
Vvi19g1004 826 PRINTS Disease resistance protein signature 127 141 - -
Vvi19g1004 826 PRINTS Disease resistance protein signature 712 728 - -
Vvi19g1004 826 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 698 795 - -
Vvi19g1004 826 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 25 688 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1004 - - - vvi:100267877 1331.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313