Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1007 ATGGTGAAGTTCCTCAAACCCAATAAGACAGCGAAGAAGTCGAGAGTCAAGGCCTTCATCAAGCTTGTCAACTACAACCACATCATGCCCACTCGCTATACTCTCGATGTAGACCTCAAGGACGTTGTCTCTCCCGATGTGCTGCAGTCAAGGGATAAGAAGGTGACGGCTGCCAAGGAGACTAAGAAGAAGCTCGAGGAGCGGTTCAAGACTGGCAAGAACAGGTGGTTCTTTTCCAAGCTCAGGTTCTAA 252 49.21 MVKFLKPNKTAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDVVSPDVLQSRDKKVTAAKETKKKLEERFKTGKNRWFFSKLRF* 84
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19906332 19906912 + Vvi19g1007 Vvi19g1007 782506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1007 83 Pfam Ribosomal L27e protein family 7 83 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vvi19g1007 83 PANTHER 60S RIBOSOMAL PROTEIN L27 8 83 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vvi19g1007 83 Coils Coil 48 75 - -
Vvi19g1007 83 ProSitePatterns Ribosomal protein L27e signature. 72 83 IPR018262 GO:0003735|GO:0005840|GO:0006412
Vvi19g1007 83 Gene3D - 1 83 IPR038655 -
Vvi19g1007 83 SUPERFAMILY Translation proteins SH3-like domain 13 83 IPR008991 -
Vvi19g1007 83 PANTHER 60S RIBOSOMAL PROTEIN L27 8 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1007 K02901 RP-L27e, RPL27; large subunit ribosomal protein L27e - vvi:100250703 142.124
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1007 . . . . . . . . Cmo16g00527 Cmo04g00662 Cma01g01332 . . . . . . . . . . . . . Cla11g01639 Cam11g1705 Cec11g1731 Cco11g1727 Clacu11g1861 Cmu11g1673 Cre11g2088 . . . . Lsi04g01921 . . Cme07g00692 . . . . . . . . . Cmo01g01388 Cmo09g00703 Cma04g00616 Cma16g00486 . . . . . . . . . . . Cla07g01033 Cam07g1472 Cec07g1186 Cco07g1163 Clacu07g1088 Cmu07g1076 Cre07g1452 . . Chy07g01074 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000938 3 3 4 3 3 2 0 3 1 2 2 3 5 3 4 5 3 3 0 3 3 3 3 2 3 2 2 3 3 1 80