Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1012 ATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGCCAGGATGAAGCTGAGCGTGGTATCACAATTAAGTCTACTGGTATCTCTCTCTACTATGAGATGAGTGATGAGTCTCTCAAGAACTACAGGGGAGAGAGACAAGGGAACGAATACCTTATCAATCTTATTGATTCCCCTGGGCACGTGGACTTCTCATCTGAGGTTACTGCTGCTCTTCGTATTACTGATGGTGCACTTGTGGTTGTGGATTGTGTTGAGGGTGTTTGTGTCCAGACCGAAACTGTTCTGCGGCAGGCCCTGGGTGAAAGGATCCGTCCTGTCTTAACTGTCAATAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTGATGGAGAGGAGGCTTACCAGACATTCTCAAGGGTTATTGAGAATGCAAATGTTATCATGGCTACTTATGAAGATCCACTTCTTGGTGATGTTCAAGTTTACCCTGAAAAGGGAACAGTTGCGTTCTCTGCTGGTTTGCATGGTTGGGCTTTTACTCTAACCAACTTTGCCAAAATGTATGCTTCCAAATTTGGAGTTGATGAGTCTAAGATGATGGAAAGGCTTTGGGGTGAGAATTTCTTTGACCCTACGTGTGATGCAGACATGGCTCCCAGCAAGTACTGCCCTCCTAGAAATGATGATTTTCCACCTTCCCTCACCTTCCACAGCTCAAAAATACCGTGTAGAGAACTTGTATGA 831 44.77 MDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPTCDADMAPSKYCPPRNDDFPPSLTFHSSKIPCRELV* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19972383 19975720 - Vvi19g1012 Vvi19g1012 782511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1012 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 246 IPR027417 -
Vvi19g1012 276 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 PRINTS GTP-binding elongation factor signature 53 61 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 PRINTS GTP-binding elongation factor signature 141 150 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 PANTHER BNAC03G76150D PROTEIN 10 242 - -
Vvi19g1012 276 Gene3D - 1 225 IPR027417 -
Vvi19g1012 276 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 IPR031157 -
Vvi19g1012 276 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 10 242 - -
Vvi19g1012 276 CDD EF2 8 218 - -
Vvi19g1012 276 Pfam Elongation factor Tu GTP binding domain 5 209 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 241 IPR000795 GO:0003924|GO:0005525
Vvi19g1012 276 TIGRFAM small_GTP: small GTP-binding protein domain 7 165 IPR005225 GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1012 K03234 - vvi:100261253 476.478