Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1014 ATGTATCCCATAGGAGCTTTTTTTTCACCATCAACCAAACGAAGCACACGAACTAGGGGACCCGAAACCTTTAAGCAAAACACAATAGTGTTCCAAAATGAAGGCATTAGAACTATGTTGGCTATAGTTTTCCCCTTCTGCTCTTTTGCCCATTTACTATCTGACCAATCCGAGCTTGTAAACATCTTCCTCAAATTGTTTTTTTGTTCATGCAATCGCGATAATGTGATGAAAGCAGTTGCAAACCGAGTCTTAGCAGGCCTAAGCAATTCCCTTTGTCCAGTAAACCGCCTCATCATGTTGAGTGGAGTGACGTCTGCCTACAGATACTTGTTAAGTTTAAAGATCACATCCCAAATGGCACCCATCAGGGGCATTCTTACTCTGCAAAGAATGGCATTAGTTTCACGTCAAAGCAAAAAGTGGGGCCCAGGCTGTAGAGCTTTTAGCACTCAGGCTGCAACAACTGCAAGTGCTTCACAGCCTCCACCACCTCCTCCACCTCCAGAGAAAACCCATTTTGGTGGCCTGAAAGATGAGGACCGCATCTTCACCAATCTTTATGGGTTGCATGACCCATTTCTTAAAGGTGCCATGAAAAGGGGCGACTGGTACAGGACCAAAGACATAGTACTCAAGGGTTCTGATTGGATTGTAAATGAAATGAAGAAATCTGGTCTCCGTGGACGTGGTGGTGCCGGTTTTCCATCTGGCCTCAAATGGTCCTTCATGCCAAAAGTATCTGATGGCCGTCCTTCCTATCTTGTTGTCAATGCTGATGAAAGTGAACCTGGAACATTAATACCTGGGGGTTCATCCGTTCCTCTCCTTCCCAAGCACATATGCTGTCTTACTTTTACAAGCATGAGAGCTGTGGACAGTGGCACACAATCTGTGCATTGGGTGATGCAGCTGCTTGGCCTGTTCAGGGTCTTATCAGGCATTTTAGACCAGAACTTGAGAGAAGGATCAGGGAGCGTGCGGAGAGGGAGTTGCTGGAAGTGGCCGCTGCTTAAGTATTTTATGCAGGGAAACACCGGAACTGGTGGGTAA 1053 46.25 MYPIGAFFSPSTKRSTRTRGPETFKQNTIVFQNEGIRTMLAIVFPFCSFAHLLSDQSELVNIFLKLFFCSCNRDNVMKAVANRVLAGLSNSLCPVNRLIMLSGVTSAYRYLLSLKITSQMAPIRGILTLQRMALVSRQSKKWGPGCRAFSTQAATTASASQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTLIPGGSSVPLLPKHICCLTFTSMRAVDSGTQSVHWVMQLLGLFRVLSGILDQNLREGSGSVRRGSCWKWPLLKYFMQGNTGTGG* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20026271 20062932 + Vvi19g1014 Vvi19g1014 782513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1014 350 Pfam Respiratory-chain NADH dehydrogenase 51 Kd subunit 222 266 IPR011538 -
Vvi19g1014 350 SUPERFAMILY Nqo1 FMN-binding domain-like 180 267 IPR037225 -
Vvi19g1014 350 Gene3D - 227 268 IPR037225 -
Vvi19g1014 350 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g1014 350 MobiDBLite consensus disorder prediction 153 176 - -
Vvi19g1014 350 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 139 266 - -
Vvi19g1014 350 PANTHER NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 1, MITOCHONDRIAL 139 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1014 K03942 NDUFV1; NADH dehydrogenase (ubiquinone) flavoprotein 1 [EC:7.1.1.2] - vvi:100266461 275.789
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1014 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003750 2 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 0 1 1 2 1 1 44