Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1039 ATGGGAGTTCAGGATGTGGAGACCTTGGATGGTTTGAAAGACGTGCTTTACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTAGAAAATGGTATGCAGTGAAAAAATTGTTGATGGTTGGTGCTAGAGGTAGTAAAATTATAGTAACCACCCGAAAACTTTATGTTGCATCCATTATGGGAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTAGCATTTGGAGAACAGGAGATTTTGGAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTTATTAAGTCTTTAGCAACGATATTGCAGTCTAAAAGAGAACCGGGGCAGTGGTTGTCTATTAGAAACAATAAAAATTTGCTGTCACTTGGAGATGAAAATGAGAATGTTCTAGGGGTGCTGAAACTAAGTTATGATAATTTGCCAACACATTTGAAACAATGCTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTCATTGTTGAAGACGGCAAGAACCAATCATTTTACTAATACATTAATGTATAAAATGCATAACCTTATGCATGATCTTGCACAATTAATTGTAAAACCGGAGATCCTTGTTTTAAGAAGTGGTGACAATAACATTCCAAAAGAAGCTCGTCATGTATTATTGTTTGAAGAGGTAAATCCTATTATAAATGCTTCACAGAAAATTTCCTTGAGGACTTTTTTCATGGTTAATGAGGATGGTTTTGAAGATGATTCAAAAGATGACTCAATTATAAACACAAGCTCTAAGTGTTTACGTGTGTTGAGTCTAAATAAGTTTAATATAAAGAAGGTGCCAAAGTTTGTAGGCAAATTGAGTCATTTAAGATATCTTGATCTTTCCAACAATGATTTTAAGGTACTTCCGAGTGCTATTGCAAGGTTAAAGCATTTGCAAACCCTGAAAGTCATTGATTGCGTGAATCTAAAAGAACTTCCAAAAGATACAAGAGAGTTGGTTCATCTCAGACACTTGGAGAATGATGGGTGTGCAAATTTGACTCATATGCCATGTGGAATAGGAGAGCTGACTTCACTTCAAAGCCTACCAATATTTGTCGTTGGGAATAGGAGAGGGTACTCAAGGGATCGTAAAATCGGCGGGTTGAATGAACTGGAAAAGCTTGACTACCTCAGAGGACAGCTACGAATTAAAAACCTTGAAAATGTGTGGAATGCTGAGGAATCCAGCGAGGCAAAGTTGGCAAAAAAACAACACATTCGTTCCTTGAGATTAGAATGGAGGGATCCTGAAGCTAACGATGAGAGGTGTAAGGCTGCTGAATCGGTAATGGAAGAGCTCCGGCCACACGATCAGCTAGAGAAGCTTTGGATAGATGGCTATAAAGGTGAGAAGTTTCCCAATTGGATGCATGGCTATAACGATGGGTTGTTTTCAAAGCTCGTTCACATTGTTTTATTTAGTTGTGAACGATGCCAAATTCTGCCACCCTTTGCTCAACTCCCTGCTCTCAAGTTTATGTGGCTTAGTGGTCTAGAAGAGGTGGAATACGTGACAGACTGTTCATCGGCAACACCCCCATTCTTCCCGTCTCTTCAAATGCTCAAACTCGATAATTTGCCTAAATTGAAGGGGTTGCGGAAGAAAGGCTCATCATCAGAGGAAGATCCTTCATTTCCTCTTCTTTCAAAGCTAGATGTTGGTTTTTGCCATAAATTGACATCATTGACACTGCATTCATCTCCTTCCCTTTCAGAGGCATCATTGACACTGCATCATTGTCTTAATCTGAAATCATTGACACTGCCTTCATCCCCTTGCCTTTTGGAATTATCTATCAATACTTGCTGCAACTTGGAATCATTGGAACTACCTTCATCGGGTCTTTCTAAATTATATATCACTGAATGTAATGATTTGAAATCCTTGAATCTGCATTCATCTCCTGATCTTTCTCAATTAACTATACGGGACTGCAATAACCTGACATCCTTGGCACAACCTCCATCTCGTTATCTTTCTCAATTAGAGATCAGAGATTGCCCTAACTTGACATCCTTTGAACTGCATTCAGCTCCTGAGCTTTCTAGTTTAGAGATCAGAGATTGCCCTAAGTTGACTTCCTTGGAAGTGCCTTTATTACCTGGTCTTGAGAAACTGCATTTGAATACACTCAACAAGGAGGTATTACATCAGTTTACGTTTGTCTCTGCTTCTCGACATACATGA 2301 38.5 MGVQDVETLDGLKDVLYEKISQKKYLLVLDDVWNENPRKWYAVKKLLMVGARGSKIIVTTRKLYVASIMGDKSPVSLKGLGEKESWALFSKLAFGEQEILEPEIVEIGEEIAKMCKGVPLVIKSLATILQSKREPGQWLSIRNNKNLLSLGDENENVLGVLKLSYDNLPTHLKQCFTYCALFPKDYEIEKKSLLKTARTNHFTNTLMYKMHNLMHDLAQLIVKPEILVLRSGDNNIPKEARHVLLFEEVNPIINASQKISLRTFFMVNEDGFEDDSKDDSIINTSSKCLRVLSLNKFNIKKVPKFVGKLSHLRYLDLSNNDFKVLPSAIARLKHLQTLKVIDCVNLKELPKDTRELVHLRHLENDGCANLTHMPCGIGELTSLQSLPIFVVGNRRGYSRDRKIGGLNELEKLDYLRGQLRIKNLENVWNAEESSEAKLAKKQHIRSLRLEWRDPEANDERCKAAESVMEELRPHDQLEKLWIDGYKGEKFPNWMHGYNDGLFSKLVHIVLFSCERCQILPPFAQLPALKFMWLSGLEEVEYVTDCSSATPPFFPSLQMLKLDNLPKLKGLRKKGSSSEEDPSFPLLSKLDVGFCHKLTSLTLHSSPSLSEASLTLHHCLNLKSLTLPSSPCLLELSINTCCNLESLELPSSGLSKLYITECNDLKSLNLHSSPDLSQLTIRDCNNLTSLAQPPSRYLSQLEIRDCPNLTSFELHSAPELSSLEIRDCPKLTSLEVPLLPGLEKLHLNTLNKEVLHQFTFVSASRHT* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20596643 20609026 - Vvi19g1039 Vvi19g1039 782538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1039 766 Pfam NB-ARC domain 9 167 IPR002182 GO:0043531
Vvi19g1039 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 179 IPR027417 -
Vvi19g1039 766 Gene3D - 79 164 IPR042197 -
Vvi19g1039 766 PRINTS Disease resistance protein signature 19 33 - -
Vvi19g1039 766 PRINTS Disease resistance protein signature 115 129 - -
Vvi19g1039 766 PRINTS Disease resistance protein signature 307 323 - -
Vvi19g1039 766 SUPERFAMILY L domain-like 209 630 - -
Vvi19g1039 766 Gene3D Ribonuclease Inhibitor 268 589 IPR032675 -
Vvi19g1039 766 Gene3D - 165 218 IPR036388 -
Vvi19g1039 766 SUPERFAMILY L domain-like 586 749 - -
Vvi19g1039 766 Gene3D Ribonuclease Inhibitor 590 764 IPR032675 -
Vvi19g1039 766 ProSiteProfiles Leucine-rich repeat profile. 311 333 IPR001611 GO:0005515
Vvi19g1039 766 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 10 647 - -
Vvi19g1039 766 PANTHER DISEASE RESISTANCE PROTEIN RP 10 647 IPR044974 GO:0006952
Vvi19g1039 766 Pfam Leucine rich repeat 289 339 IPR001611 GO:0005515
Vvi19g1039 766 Gene3D - 2 74 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1039 - - K15078 vvi:100855352 1484.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313