Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g104 ATGGTAAATATTGCACGTCGTCGGAGACTGCTTCAGTCATCTTATAATCTCCCTGCTGCACCTGTGAGTAGCACTGAGCTCTCGCAACTAACAACACCTTTTACTCTAAGCAGTGGAGCTTTCCCTGCAGTTAACAAACACTCTCCTCTACCATCAAACCCGTCTCTTCCTTCACCGCCTGACCTGTCTCTTAGTGCTCCTAATCCTAATACCAAGTCTCCCCAAAAGCCAGTTCACCAACCTTCAGCTCATCATTCTCCTGAAAGGAACTATTTTCACGCAATTCCTGGAGTGGTCTTTTTGTTTGTTCTTTGTGCAGTAATGCTCTACATTTGTCGGAAAAAAGCAGCAAAAGCAATAGCTCCTTGGAAGACTGGTATAAGTGGCCAGTTGCAGAAGGCACTTGTCACAGGTGTTTCCAAGCTGAACAGGGCAGAGCTAGAAGCTGCTTGTGAGGATTTCAGCAATATTCTTGATACTTTTCCTGGCTGTAAAGTATACAAGGGGACGCTTTCAAGTGGTGTTGAGATTGCTGTGGCCTCAACTACTATTGCATCTTTCAAAGAATGGTCAAGACATGCAGAAGTGGCATTTAAGAAAAGGATAGAGAAACTATCAAGAATAAACCACAGGAACTTCGTAAATATACTAGGCTACTGTCAAGAGGACGAGCCTTTCACGAGGATGATGGTGTTTGAGTATGCCCCCAATGGAAACCTCTATGAGCATCTACATGTAAAAGAAGTTGAACATCTTGACTGGAATGCTAGGGTGAGAATTATAATGGGAGTGGCCTATTGTCTTGAACACATGCACCATGTGCTGAACCCTCCTTTAGTTCATCCCCATCTGCATTCAAGTTCTATTCTTTTGACAGAAGATTGTGCTGCAAAGATTGCAGAAATAAGTTTCTGGATGGATCTGGCAACCAAATCAAAGATAGCAGATGAAGAACAATCAGAGCATTCCCTGTTGCACCCAGAAGCTGACCCTGAATCAAATGTCTACAGCTTTGGAATAATGCTGCTAGAGATCATTTCTGGGAAGGTCCCTTACAATGAAGAACAAGGATCCCTTGTGAACTGGGCTACTGAATACTTAAATGGTCAGAAGAGGATCAGCTACATGATAGATCCCTCACTCAAGTCTTTCAAGAATACTGAGCTTGATGTTATATGTGAGATAATCCAGGAATGCATAAATGAAGAACCAAAGCATAGGCCAACAATGAAAGACATAGTCTCAAGCCTAAGGAATGTGATTGCAGTCTCCCCAGATCAAGCAACTCCAAAACTCTCTCCCCTATGGTGGGCAGAACTTCAAATCCTTTCAGTTGAGGCCAGTTAA 1347 43.13 MVNIARRRRLLQSSYNLPAAPVSSTELSQLTTPFTLSSGAFPAVNKHSPLPSNPSLPSPPDLSLSAPNPNTKSPQKPVHQPSAHHSPERNYFHAIPGVVFLFVLCAVMLYICRKKAAKAIAPWKTGISGQLQKALVTGVSKLNRAELEAACEDFSNILDTFPGCKVYKGTLSSGVEIAVASTTIASFKEWSRHAEVAFKKRIEKLSRINHRNFVNILGYCQEDEPFTRMMVFEYAPNGNLYEHLHVKEVEHLDWNARVRIIMGVAYCLEHMHHVLNPPLVHPHLHSSSILLTEDCAAKIAEISFWMDLATKSKIADEEQSEHSLLHPEADPESNVYSFGIMLLEIISGKVPYNEEQGSLVNWATEYLNGQKRISYMIDPSLKSFKNTELDVICEIIQECINEEPKHRPTMKDIVSSLRNVIAVSPDQATPKLSPLWWAELQILSVEAS* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1346881 1349339 - Vvi19g104 Vvi19g104 781603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g104 448 MobiDBLite consensus disorder prediction 47 86 - -
Vvi19g104 448 ProSiteProfiles Protein kinase domain profile. 152 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g104 448 SUPERFAMILY Protein kinase-like (PK-like) 164 417 IPR011009 -
Vvi19g104 448 MobiDBLite consensus disorder prediction 65 80 - -
Vvi19g104 448 Gene3D Transferase(Phosphotransferase) domain 1 235 429 - -
Vvi19g104 448 PANTHER PROTEIN MALE DISCOVERER 2 4 447 - -
Vvi19g104 448 PANTHER PROTEIN MALE DISCOVERER 2 4 447 - -
Vvi19g104 448 Gene3D Phosphorylase Kinase; domain 1 123 234 - -
Vvi19g104 448 Pfam Protein tyrosine and serine/threonine kinase 165 417 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g104 - - - vvi:100854079 837.025
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g226 Vvi19g104 ECH
Vvi12g153 Vvi19g104 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005390 2 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76410 PF07714 PK_Tyr_Ser-Thr 1.20E-27 CL0016 Vvi PK