Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1041 ATGGCTCCTAGCTTTGATGATGGCGACTCACTATACAACTTTGTGGTCAGAGATGGCAATGGTGTTAAAGGCATGGTGGACCTTGGTCTGGAGAAGGTGCCAGAGCAATACATTCAGCCACAGCATGAGCGCATAGACAAGCTCAAAGCAAGTTCCTATGATCGGCCGCCAATAGATTTATCAATGCTTGGCGGACCTCAGCATAGCCAAGTGATGGAGTTGATAGCCGAGGCAGCCGAGAGTGTGGGGTTCTTCCAAGTTGTGAACCATGGGGTGCCCAATGAAGTGCTGGAGTCGGTTAAGAGCGCGGCGCATGAGTTCTTTGGACAAGCTCCTGAGAAGAAGGCGGTGTATCGGAAGGGGGTGAGCCCGAGCCCGTACGTGAAGTATGGGACGAGCTTTGTGCCTGAGAAAGAGAAGGCATTGGAGTGGAAGGACTACGTTAGTATGGTGTATACGAGCGATGCCGATGCATTTGAATTTTGGCCTAATGAATGCAAGGAAGTAGCGCTAGAGTTCCTGAAGGCATCCATCTCAATGGTGAGAAGAATACTAGAAGTGTTAATGGAGAAGCTTGGAGTAACTCTAGATGAATCAAGAATCGATGGCCTCATTGGTTTAAAAATGGTGAACATGAACTTCTACCCCACCTGCCCTAACCCGGATCTCACCGTTGGCGTGGGACGCCACTCTGATATGGGCATGTTAACGGTGTTGCTACAAGATGGTATCGGCGGATTATACGTGAAAATGGAGGAAGACATCACAGGTGCTGGAAAGAAAGGAGAGTGGGTGGAGATACCACCCACACCAGGCGCATTGGTCATCAATGTTGGTGATACATTACAGATATTAAGCAATGGGAAGTACAAAAGCGCAGAACATAGGGTGCGTACCACAAGCACTCAATCCAGAGTGTCGATCCCTATATTCACCATTCCGAGACCAAATGAGAAGATCGGGCCATTGCCTCAAGTGGTTGAGAGAGATGGGGTTGCTCATTATCGCGAGGTTGTGGTTGAGGAGTACATGAACAACTTTTTTGGGAAAGCTCATGAAGGGAAGAACTTCAAGGCCCTAAGTCTTGCTTCGACAATCACACAAAATTCCTATGATCGACCACCAATAGATTTATCAATGCTTGATGGACCTCAGCATAGCCAAGTGGTGGGATTGATAGCTGAGGCAGCCGAGAGGGTTGGTTTCTTCCAAGTTGTGAACCATAGGGTGCCCATTGAAGTTCTGGAGTCGGTTAAGAGCGCGGCACATGAGTTCTTTGGACAAGCGCCTGAGAAGAAGGCGGTGTATCGGAAGGGAGTGAGCCCTAGCCCATATGTGAAGTATGGGACGAGCTTTGTGCCTGAGAAAGAGAAAGCATTGAAGTGGAAGGACTATGTTAGTATGGTGTATACGAGCGATGGCGAAGCACTTGAATTTTGGCCTAATGAATGCAAGTAA 1458 48.42 MAPSFDDGDSLYNFVVRDGNGVKGMVDLGLEKVPEQYIQPQHERIDKLKASSYDRPPIDLSMLGGPQHSQVMELIAEAAESVGFFQVVNHGVPNEVLESVKSAAHEFFGQAPEKKAVYRKGVSPSPYVKYGTSFVPEKEKALEWKDYVSMVYTSDADAFEFWPNECKEVALEFLKASISMVRRILEVLMEKLGVTLDESRIDGLIGLKMVNMNFYPTCPNPDLTVGVGRHSDMGMLTVLLQDGIGGLYVKMEEDITGAGKKGEWVEIPPTPGALVINVGDTLQILSNGKYKSAEHRVRTTSTQSRVSIPIFTIPRPNEKIGPLPQVVERDGVAHYREVVVEEYMNNFFGKAHEGKNFKALSLASTITQNSYDRPPIDLSMLDGPQHSQVVGLIAEAAERVGFFQVVNHRVPIEVLESVKSAAHEFFGQAPEKKAVYRKGVSPSPYVKYGTSFVPEKEKALKWKDYVSMVYTSDGEALEFWPNECK* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20810624 20819467 - Vvi19g1041 Vvi19g1041 782540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1041 485 SUPERFAMILY Clavaminate synthase-like 365 483 - -
Vvi19g1041 485 Pfam 2OG-Fe(II) oxygenase superfamily 210 312 IPR044861 -
Vvi19g1041 485 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 369 484 - -
Vvi19g1041 485 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 3 355 - -
Vvi19g1041 485 SUPERFAMILY Clavaminate synthase-like 21 354 - -
Vvi19g1041 485 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 314 IPR005123 -
Vvi19g1041 485 PANTHER SCOPOLETIN 8-HYDROXYLASE 3 355 - -
Vvi19g1041 485 PANTHER SCOPOLETIN 8-HYDROXYLASE 369 484 - -
Vvi19g1041 485 Gene3D - 11 346 IPR027443 -
Vvi19g1041 485 Gene3D - 350 485 IPR027443 -
Vvi19g1041 485 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 157 IPR026992 -
Vvi19g1041 485 Pfam non-haem dioxygenase in morphine synthesis N-terminal 374 472 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1041 K23145 S8H; scopoletin 8-hydroxylase [EC:1.14.11.60] - vvi:100259503 717.998
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1041 . . . . . . . . Cmo16g00543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00499 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010310 2 0 1 2 3 0 0 0 0 1 0 0 0 0 2 0 0 6 0 0 1 3 0 0 0 3 1 0 2 3 30