Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1042 ATGAAGGAGAGTGGCAGGAAACAAGGTGCAGTTTCGCCATGCGCCGCATGCAAGCTTCTTCGCCGTAGATGTGCTCAGGACTGTGTCTTTGCTCCTTACTTTCCGGCTGATGAGCCACATAAGTTTGCCAGTGTGCACAAGGTGTTTGGAGCAAGCAATGTCAATAAGATGTTACAGGAGTTGCCGGAGCACCAGCGCAGTGATGCTGTGAGTTCCATGGTGTACGAAGCAAACGCCAGGGTGCGTGACCCGGTTTATGGCTGTGTTGGGGCCATATCGTCCCTGCAGCAACAGATCGACGCCCTTCAAACACAATTGGCACTGGTGCAGGCTGAAGTAGTGCAGATGAGAATGAACCAATTCACATCCTCAACCTCCAACCAAGCCACAGATTCACCAGAAAACGCCTCACACACATCCAGGCTTGCTGCATCTCCTCAGACCAAGTCCTTTTTTTCCATGGACATGGTGGTAGATCATGCCAATATGGTGGAGTCCCTTTGGTCATACTAG 513 51.27 MKESGRKQGAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFTSSTSNQATDSPENASHTSRLAASPQTKSFFSMDMVVDHANMVESLWSY* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20862596 20865868 + Vvi19g1042 Vvi19g1042 782541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1042 170 MobiDBLite consensus disorder prediction 122 144 - -
Vvi19g1042 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vvi19g1042 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 166 - -
Vvi19g1042 170 Coils Coil 92 119 - -
Vvi19g1042 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 166 - -
Vvi19g1042 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14390 PF03195 LOB 8.00E-44 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1042 - - vvi:100252484 341.273