Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1047 ATGTCCATCCACCCCTATAAAGATATCTCTTACTTTGTTCCATATTCTCTCACAATTCCCTCAGCTTCTCATCTTGTACGTGCTGTATTTTCTTCGCTTTCTGCTACTTTGAGTTGTTCCAAAATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAAGTTGGGGTCCAAGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGATGACCAAGCTCAAGGACAACCTGGACGTCATCAAAGGTGTACTTCTGGATGCTGAGGAACAGCAGCAGCAGAAAACTCGTGGAATAGAAGCTTGGGTCCAGAAGCTCAAAGGCGCCGTGTATGACGCAGATGACTTGCTGGATGATTATGCAACCCATTATCTACAGCGAGGAGGATTCGCAAGGCAGGTCAGTGACTTCTTCTCACCTGTAAATCAAGTTGTTTTTCGCTTTAAGATGAGTCATAGACTCAAGGATATCAATGAAAGGCTGGACGCTATCGAAAAAAAAATCCCCATGTTAAATCTCATTCCACGGGACATAGTACTACACACACGGGAAGAGAGGAGTGGGAGAGAAACCCACTCATTCTTGTTGCCGTCTGATATTGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAATCGGTATACAATGACCAAAGAGTAAAACATTTTCAGTATAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGATGTGGAGAGTCTGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTGGAAAATGGTATGAACTGAAAAAATTGTTGATGGTTGGTGCTAGAGGAAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGTCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTTGGTGGTACATCTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAAGTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGGAACCAATCATTTTAAAATGCATGACCTTATACATGATCTTGCACAATCAATTGTAGGATCTGAGATCCTTGTTTTAAGAAGTGATGTAAATAACATTCCAGAAGAAGCTCGTCATGTATCATTGTTTGAAGAGATAAATCCTATGATAAAGGCTCTAAAGGGAAAACCCATAAGAACCTTTCTTTGTAAATATTCTTATAAAGATAGTACAATTGTAAATTCATTTTTTTCATGTTTTATGTGTTTACGTGCATTGAGTTTAAGTTGTACGGGTATAAAGGAGGTGCCAGGGCATTTAGGCAAATTGAGTCATTTAAGGTATCTTGATCTTTCCTACAATGAGTTTAAGGTACTTCCGAATGCTATTACAAGGTTAAAGAATTTGCAAACACTAAAACTCACCAGCTGTAAGAGATTAAAAGGAATTCCAGACAATATAGGAGAATTGATCAATCTTAGACACTTGGAGAATGATAGTTGTTATAACTTGGCTCATATGCCACATGGAATCGGCAAGTTGACTTTACTTCGAAGTCTACCATTGTTTGTGGTTGGGAATGACATAGGGTTAAGGAATCACAAAATTGGTAGCTTGAGTGAATTGAAAGGCCTTAACCAACTAGGAGGAGGGTTATGCATAAGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAATCGGCGGGGCCAAGATGGGGAGTATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCGACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGGGTTGGGTTCCCTGTTTCCCTACCTAATTGAAATTGAAATTTGGGAATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTGAACTCCCTTCTCTCAAGTCTTTGAAGCTTGATGATATGAAAGAAGCGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCAAACTCTGTTCCATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAGGGTCCTTCATTTTCTCATCTTTCGAAGTTATATATTTATAAATGCTCTAGTTTGGCATCACTGCATCCGTCTCCTTCTCTTTCTCAATTAGTGATCAGAAATTGCCATAACTTGGCATCACTGCATCCTTCTCCTTCTCTTTCTCAATTAGAGATCGGACATTGCCGTAACTTGGCTTCCTTGGAACTGCATTCATCTCCTTGTCTTTCAAAATTAGAGATCATATATTGCCATAGCTTGGCATCCTTGGAACTGCATTCATCTCCTTGTCTTTCAAAATTAAAGATCAGCTATTGCCATAACTTGGCATCCTTGGAACTGCATTCATCTCCTTGTCTTTCAAAATTAGAGGTCGGAAATTGCGATAATTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAGAGATCGAAGCTTGCAGTAACTTGGCTTCCTTGGAACTGCATTCATCTCTCTCTCCTTCTCGATTAATGATCCATAGTTGCCCAAACTTGACATCCATGGAACTGCCGTCATCTCTTTGTCTTTCTCAATTATATATCAGAAATTGCCATAATTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAAACATCCATGATTGCCCAAACTTGACATCCATGGAACTGCGGTCATCTCTTTGTCTTTCTGATTTAGAAATCAGTAAATGCCCTAACTTGGCATCCTTCAAAGTGGCTCCATTACCTTCTCTTGAGACACTATATCTGTTCAGAGTTAGATATGGTGCGATATGGCAGATAATGTCTGTCTCTGCTTCTTCTTCGTTGAAGTCTCTGCATATTGGAAGCATAGATGATATGATATCTCTCCCGAAGGAGCTACTTCAACATGTTTCTGGCTTGGTAACGTTAGAGATCCGTGAGTGTCCTAACTTGGCATCCTTGGAACTGCCGTCATCTCCTTCTCTTTCTGGATTAACGATCCGTGATTGCCCAAACTTGACATCCATGAAACTGCCGTCATCTCTTTGTCTTTCTCAATTAGAGATCATCGATTGCCATAACTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAGTGATCAGAAATTGCCATAACTTGGTATCCTTGGAACTGCCGTCATCCCATTGTCTTTCTAAATTAAAGATCATAAAATGCCCTAACTTGGCATCCTTCAATACGGCATCATTACCTCGTCTTGAGGAACTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTCATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTGCGTATACGGGAGATTGATGGTATGATATCTCTCCCAGAGGAGACGCTTCAATATGTTTCCACTCTCGAAACTCTCTACATTGTTAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGGAACTTATTATTTATGACTGCTCTGAATTGACATCACTGCCAGAAGAGATCTATTCCCTAAAAAAACTGCAGAAATTTTATTTCTGTGATTATCCACACCTACGGGAAAGATACAACAAGGAAACAGGTAAAGACCGGGCCAAGATTGCTCATATCCCACATGTTCGTTTCTACCTTGATTCCGATATGGAATGGCAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTATTTAA 4242 39.98 MSIHPYKDISYFVPYSLTIPSASHLVRAVFSSLSATLSCSKMADQIPFGVVEHILTKLGSKAFQEIGSMYGVPKEMTKLKDNLDVIKGVLLDAEEQQQQKTRGIEAWVQKLKGAVYDADDLLDDYATHYLQRGGFARQVSDFFSPVNQVVFRFKMSHRLKDINERLDAIEKKIPMLNLIPRDIVLHTREERSGRETHSFLLPSDIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQSVYNDQRVKHFQYKTWVCISDDSGDGLDVKLWVKKILKSMGVQDVESLTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYELKKLLMVGARGSKIIVTTRKLNVASIMEDKSPVSLKGLGEKESWALFSKFAFREQEILKPEIVEIGEEIAKMCKGNVLGVLKLSYDNLSTHLRQCFTYCALFPKDYEIEKKLVVHLWIAQGYIQSSNDNNEQVEDIGDQYVEELLSRSLLEKAGTNHFKMHDLIHDLAQSIVGSEILVLRSDVNNIPEEARHVSLFEEINPMIKALKGKPIRTFLCKYSYKDSTIVNSFFSCFMCLRALSLSCTGIKEVPGHLGKLSHLRYLDLSYNEFKVLPNAITRLKNLQTLKLTSCKRLKGIPDNIGELINLRHLENDSCYNLAHMPHGIGKLTLLRSLPLFVVGNDIGLRNHKIGSLSELKGLNQLGGGLCISNLQNVRDVELVSRGEILKGKQYLQSLRLEWNRRGQDGEYEGDKSVMEGLQPHRHLKDIFIEGYGGTEFPSWMMNDGLGSLFPYLIEIEIWECSRCKILPPFSELPSLKSLKLDDMKEAVELKEGSLTTPLFPSLESLKLCSMPKLKELWRMDLLAEEGPSFSHLSKLYIYKCSSLASLHPSPSLSQLVIRNCHNLASLHPSPSLSQLEIGHCRNLASLELHSSPCLSKLEIIYCHSLASLELHSSPCLSKLKISYCHNLASLELHSSPCLSKLEVGNCDNLASLELHSSPSLSQLEIEACSNLASLELHSSLSPSRLMIHSCPNLTSMELPSSLCLSQLYIRNCHNLASLELHSSPSLSQLNIHDCPNLTSMELRSSLCLSDLEISKCPNLASFKVAPLPSLETLYLFRVRYGAIWQIMSVSASSSLKSLHIGSIDDMISLPKELLQHVSGLVTLEIRECPNLASLELPSSPSLSGLTIRDCPNLTSMKLPSSLCLSQLEIIDCHNLASLELHSSPSLSQLVIRNCHNLVSLELPSSHCLSKLKIIKCPNLASFNTASLPRLEELSLRGVRAEVLRQFMFVSASSSLKSLRIREIDGMISLPEETLQYVSTLETLYIVKCSGLATLLHWMGSLSSLTELIIYDCSELTSLPEEIYSLKKLQKFYFCDYPHLRERYNKETGKDRAKIAHIPHVRFYLDSDMEWQVGPKSLTFLPIFII* 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21058384 21062740 + Vvi19g1047 Vvi19g1047 782546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1047 1413 SUPERFAMILY L domain-like 1073 1376 - -
Vvi19g1047 1413 Gene3D - 195 361 IPR027417 -
Vvi19g1047 1413 Gene3D Ribonuclease Inhibitor 1229 1375 IPR032675 -
Vvi19g1047 1413 Pfam NB-ARC domain 208 409 IPR002182 GO:0043531
Vvi19g1047 1413 SUPERFAMILY L domain-like 484 955 - -
Vvi19g1047 1413 Coils Coil 76 96 - -
Vvi19g1047 1413 PRINTS Disease resistance protein signature 229 244 - -
Vvi19g1047 1413 PRINTS Disease resistance protein signature 305 319 - -
Vvi19g1047 1413 PRINTS Disease resistance protein signature 605 621 - -
Vvi19g1047 1413 PANTHER DISEASE RESISTANCE PROTEIN RP 85 901 IPR044974 GO:0006952
Vvi19g1047 1413 Gene3D Ribonuclease Inhibitor 852 1184 IPR032675 -
Vvi19g1047 1413 Pfam Leucine rich repeat 564 618 IPR001611 GO:0005515
Vvi19g1047 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 427 IPR027417 -
Vvi19g1047 1413 Pfam Rx N-terminal domain 50 133 IPR041118 -
Vvi19g1047 1413 Gene3D - 408 499 IPR036388 -
Vvi19g1047 1413 ProSiteProfiles Leucine-rich repeat profile. 586 608 IPR001611 GO:0005515
Vvi19g1047 1413 Gene3D - 50 159 - -
Vvi19g1047 1413 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 85 901 - -
Vvi19g1047 1413 Gene3D Ribonuclease Inhibitor 543 851 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1047 - - - vvi:100262891 2217.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313