Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1047 ATGTCCATCCACCCCTATAAAGATATCTCTTACTTTGTTCCATATTCTCTCACAATTCCCTCAGCTTCTCATCTTGTACGTGCTGTATTTTCTTCGCTTTCTGCTACTTTGAGTTGTTCCAAAATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAAGTTGGGGTCCAAGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGATGACCAAGCTCAAGGACAACCTGGACGTCATCAAAGGTGTACTTCTGGATGCTGAGGAACAGCAGCAGCAGAAAACTCGTGGAATAGAAGCTTGGGTCCAGAAGCTCAAAGGCGCCGTGTATGACGCAGATGACTTGCTGGATGATTATGCAACCCATTATCTACAGCGAGGAGGATTCGCAAGGCAGGTCAGTGACTTCTTCTCACCTGTAAATCAAGTTGTTTTTCGCTTTAAGATGAGTCATAGACTCAAGGATATCAATGAAAGGCTGGACGCTATCGAAAAAAAAATCCCCATGTTAAATCTCATTCCACGGGACATAGTACTACACACACGGGAAGAGAGGAGTGGGAGAGAAACCCACTCATTCTTGTTGCCGTCTGATATTGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAATCGGTATACAATGACCAAAGAGTAAAACATTTTCAGTATAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGATGTGGAGAGTCTGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTGGAAAATGGTATGAACTGAAAAAATTGTTGATGGTTGGTGCTAGAGGAAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGTCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTTGGTGGTACATCTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAAGTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGGAACCAATCATTTTAAAATGCATGACCTTATACATGATCTTGCACAATCAATTGTAGGATCTGAGATCCTTGTTTTAAGAAGTGATGTAAATAACATTCCAGAAGAAGCTCGTCATGTATCATTGTTTGAAGAGATAAATCCTATGATAAAGGCTCTAAAGGGAAAACCCATAAGAACCTTTCTTTGTAAATATTCTTATAAAGATAGTACAATTGTAAATTCATTTTTTTCATGTTTTATGTGTTTACGTGCATTGAGTTTAAGTTGTACGGGTATAAAGGAGGTGCCAGGGCATTTAGGCAAATTGAGTCATTTAAGGTATCTTGATCTTTCCTACAATGAGTTTAAGGTACTTCCGAATGCTATTACAAGGTTAAAGAATTTGCAAACACTAAAACTCACCAGCTGTAAGAGATTAAAAGGAATTCCAGACAATATAGGAGAATTGATCAATCTTAGACACTTGGAGAATGATAGTTGTTATAACTTGGCTCATATGCCACATGGAATCGGCAAGTTGACTTTACTTCGAAGTCTACCATTGTTTGTGGTTGGGAATGACATAGGGTTAAGGAATCACAAAATTGGTAGCTTGAGTGAATTGAAAGGCCTTAACCAACTAGGAGGAGGGTTATGCATAAGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAATCGGCGGGGCCAAGATGGGGAGTATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCGACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGGGTTGGGTTCCCTGTTTCCCTACCTAATTGAAATTGAAATTTGGGAATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTGAACTCCCTTCTCTCAAGTCTTTGAAGCTTGATGATATGAAAGAAGCGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCAAACTCTGTTCCATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAGGGTCCTTCATTTTCTCATCTTTCGAAGTTATATATTTATAAATGCTCTAGTTTGGCATCACTGCATCCGTCTCCTTCTCTTTCTCAATTAGTGATCAGAAATTGCCATAACTTGGCATCACTGCATCCTTCTCCTTCTCTTTCTCAATTAGAGATCGGACATTGCCGTAACTTGGCTTCCTTGGAACTGCATTCATCTCCTTGTCTTTCAAAATTAGAGATCATATATTGCCATAGCTTGGCATCCTTGGAACTGCATTCATCTCCTTGTCTTTCAAAATTAAAGATCAGCTATTGCCATAACTTGGCATCCTTGGAACTGCATTCATCTCCTTGTCTTTCAAAATTAGAGGTCGGAAATTGCGATAATTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAGAGATCGAAGCTTGCAGTAACTTGGCTTCCTTGGAACTGCATTCATCTCTCTCTCCTTCTCGATTAATGATCCATAGTTGCCCAAACTTGACATCCATGGAACTGCCGTCATCTCTTTGTCTTTCTCAATTATATATCAGAAATTGCCATAATTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAAACATCCATGATTGCCCAAACTTGACATCCATGGAACTGCGGTCATCTCTTTGTCTTTCTGATTTAGAAATCAGTAAATGCCCTAACTTGGCATCCTTCAAAGTGGCTCCATTACCTTCTCTTGAGACACTATATCTGTTCAGAGTTAGATATGGTGCGATATGGCAGATAATGTCTGTCTCTGCTTCTTCTTCGTTGAAGTCTCTGCATATTGGAAGCATAGATGATATGATATCTCTCCCGAAGGAGCTACTTCAACATGTTTCTGGCTTGGTAACGTTAGAGATCCGTGAGTGTCCTAACTTGGCATCCTTGGAACTGCCGTCATCTCCTTCTCTTTCTGGATTAACGATCCGTGATTGCCCAAACTTGACATCCATGAAACTGCCGTCATCTCTTTGTCTTTCTCAATTAGAGATCATCGATTGCCATAACTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAGTGATCAGAAATTGCCATAACTTGGTATCCTTGGAACTGCCGTCATCCCATTGTCTTTCTAAATTAAAGATCATAAAATGCCCTAACTTGGCATCCTTCAATACGGCATCATTACCTCGTCTTGAGGAACTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTCATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTGCGTATACGGGAGATTGATGGTATGATATCTCTCCCAGAGGAGACGCTTCAATATGTTTCCACTCTCGAAACTCTCTACATTGTTAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGGAACTTATTATTTATGACTGCTCTGAATTGACATCACTGCCAGAAGAGATCTATTCCCTAAAAAAACTGCAGAAATTTTATTTCTGTGATTATCCACACCTACGGGAAAGATACAACAAGGAAACAGGTAAAGACCGGGCCAAGATTGCTCATATCCCACATGTTCGTTTCTACCTTGATTCCGATATGGAATGGCAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTATTTAA 4242 39.98 MSIHPYKDISYFVPYSLTIPSASHLVRAVFSSLSATLSCSKMADQIPFGVVEHILTKLGSKAFQEIGSMYGVPKEMTKLKDNLDVIKGVLLDAEEQQQQKTRGIEAWVQKLKGAVYDADDLLDDYATHYLQRGGFARQVSDFFSPVNQVVFRFKMSHRLKDINERLDAIEKKIPMLNLIPRDIVLHTREERSGRETHSFLLPSDIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQSVYNDQRVKHFQYKTWVCISDDSGDGLDVKLWVKKILKSMGVQDVESLTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYELKKLLMVGARGSKIIVTTRKLNVASIMEDKSPVSLKGLGEKESWALFSKFAFREQEILKPEIVEIGEEIAKMCKGNVLGVLKLSYDNLSTHLRQCFTYCALFPKDYEIEKKLVVHLWIAQGYIQSSNDNNEQVEDIGDQYVEELLSRSLLEKAGTNHFKMHDLIHDLAQSIVGSEILVLRSDVNNIPEEARHVSLFEEINPMIKALKGKPIRTFLCKYSYKDSTIVNSFFSCFMCLRALSLSCTGIKEVPGHLGKLSHLRYLDLSYNEFKVLPNAITRLKNLQTLKLTSCKRLKGIPDNIGELINLRHLENDSCYNLAHMPHGIGKLTLLRSLPLFVVGNDIGLRNHKIGSLSELKGLNQLGGGLCISNLQNVRDVELVSRGEILKGKQYLQSLRLEWNRRGQDGEYEGDKSVMEGLQPHRHLKDIFIEGYGGTEFPSWMMNDGLGSLFPYLIEIEIWECSRCKILPPFSELPSLKSLKLDDMKEAVELKEGSLTTPLFPSLESLKLCSMPKLKELWRMDLLAEEGPSFSHLSKLYIYKCSSLASLHPSPSLSQLVIRNCHNLASLHPSPSLSQLEIGHCRNLASLELHSSPCLSKLEIIYCHSLASLELHSSPCLSKLKISYCHNLASLELHSSPCLSKLEVGNCDNLASLELHSSPSLSQLEIEACSNLASLELHSSLSPSRLMIHSCPNLTSMELPSSLCLSQLYIRNCHNLASLELHSSPSLSQLNIHDCPNLTSMELRSSLCLSDLEISKCPNLASFKVAPLPSLETLYLFRVRYGAIWQIMSVSASSSLKSLHIGSIDDMISLPKELLQHVSGLVTLEIRECPNLASLELPSSPSLSGLTIRDCPNLTSMKLPSSLCLSQLEIIDCHNLASLELHSSPSLSQLVIRNCHNLVSLELPSSHCLSKLKIIKCPNLASFNTASLPRLEELSLRGVRAEVLRQFMFVSASSSLKSLRIREIDGMISLPEETLQYVSTLETLYIVKCSGLATLLHWMGSLSSLTELIIYDCSELTSLPEEIYSLKKLQKFYFCDYPHLRERYNKETGKDRAKIAHIPHVRFYLDSDMEWQVGPKSLTFLPIFII* 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21058384 21062740 + Vvi19g1047 Vvi19g1047 782546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1047 1413 SUPERFAMILY L domain-like 1073 1376 - -
Vvi19g1047 1413 Gene3D - 195 361 IPR027417 -
Vvi19g1047 1413 Gene3D Ribonuclease Inhibitor 1229 1375 IPR032675 -
Vvi19g1047 1413 Pfam NB-ARC domain 208 409 IPR002182 GO:0043531
Vvi19g1047 1413 SUPERFAMILY L domain-like 484 955 - -
Vvi19g1047 1413 Coils Coil 76 96 - -
Vvi19g1047 1413 PRINTS Disease resistance protein signature 229 244 - -
Vvi19g1047 1413 PRINTS Disease resistance protein signature 305 319 - -
Vvi19g1047 1413 PRINTS Disease resistance protein signature 605 621 - -
Vvi19g1047 1413 PANTHER DISEASE RESISTANCE PROTEIN RP 85 901 IPR044974 GO:0006952
Vvi19g1047 1413 Gene3D Ribonuclease Inhibitor 852 1184 IPR032675 -
Vvi19g1047 1413 Pfam Leucine rich repeat 564 618 IPR001611 GO:0005515
Vvi19g1047 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 427 IPR027417 -
Vvi19g1047 1413 Pfam Rx N-terminal domain 50 133 IPR041118 -
Vvi19g1047 1413 Gene3D - 408 499 IPR036388 -
Vvi19g1047 1413 ProSiteProfiles Leucine-rich repeat profile. 586 608 IPR001611 GO:0005515
Vvi19g1047 1413 Gene3D - 50 159 - -
Vvi19g1047 1413 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 85 901 - -
Vvi19g1047 1413 Gene3D Ribonuclease Inhibitor 543 851 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1047 - - vvi:100262891 2217.19