Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1050 ATGCTTACTTACTTCAGAGGGGCCACTGCTCGCCACCACCACTTCATGGCTGTGCCCATTTCACTTGCCCAAGTCACTCTCTTCTCCAAACCCTCCATTTTACTCCACAGAAATGCCATCATTGGCTTCTCCTTTTCCATTCCTTTCTCCTCTTCTTCTGCTCACAAGATTCAGACTCACAAGTGGAGGCAACCGGTGGTCTCGCTTCTGGAGCTTGGTGGAGTCAAGATTGGCAGAGATGATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTTGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCTGAAGAATGCAATATATGATTATTTCAATGCCAATTACTCTAACAAATTTGATAAGTTGGATGACCTTTGCCCAATAGTCTCCACAAAAGAGAATTTTGATGATGTCTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAATGATACATACTACATTGACTCTCAAACTGTCTTGAGGTGCCACACTAGGGCTCATCAAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTACCTGTTTTTCATCAGATGGAAGGTGTTCGTGTCTTCTTTCCAGGTGATTGGGAGACATCTGGAATGGATGCACTTGTTTGGTAATGTAGAAATGCACTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTGTCAGGAGAAATGGTTAGAAGTTTTAGGTTGTGGGGTGACAGAGCAAGAAATATTACAGAAAAGTGGTAAAACAGGTAATGTTGCTTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTGTTTGGGATACCTGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTGACCTCTCAATTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGGCATGAGTTTTTGGATTAATGAGTCGTTCACAGAAAACAATTTATGTGAGGTTGTAAGAGGAGTTGCTGGAGATTTTGTCCAGGAGGTGCAATTGATCGACAATTTCACCAACAACAAAGGAATGACCAGTCAATGTTATCGGATAGCATACCGGTCCATGGAGCGTTCACTTACAGATGAGGAGATAAATGAGTTGCAGTGGAATGTTAGGGAGCAAGTGCACAGCAAGTTGAAGGTTGTTCTTAGATGA 1275 42.9 MLTYFRGATARHHHFMAVPISLAQVTLFSKPSILLHRNAIIGFSFSIPFSSSSAHKIQTHKWRQPVVSLLELGGVKIGRDDVVRDDPTNNVPDAIFLKLGMQLHRRDQHPIGILKNAIYDYFNANYSNKFDKLDDLCPIVSTKENFDDVLVPPDHISRSYNDTYYIDSQTVLRCHTRAHQAELLRRGHTHFLVTGDVYHRDFIDSTHYLFFIRWKVFVSSFQVIGRHLEWMHLFGNVEMHWIDTYFPFTNPSFELEIYCQEKWLEVLGCGVTEQEILQKSGKTGNVAWAFGLGLERLAMVLFGIPDIRLFWSTDERLTSQFSKDQLGVKFKPFSKYPPCYKGMSFWINESFTENNLCEVVRGVAGDFVQEVQLIDNFTNNKGMTSQCYRIAYRSMERSLTDEEINELQWNVREQVHSKLKVVLR* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21087507 21109170 + Vvi19g1050 Vvi19g1050 782549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1050 424 SUPERFAMILY Class II aaRS and biotin synthetases 98 321 IPR045864 -
Vvi19g1050 424 Gene3D Bira Bifunctional Protein; Domain 2 223 330 IPR045864 -
Vvi19g1050 424 Gene3D Bira Bifunctional Protein; Domain 2 75 222 IPR045864 -
Vvi19g1050 424 Pfam Ferredoxin-fold anticodon binding domain 334 424 IPR005121 -
Vvi19g1050 424 ProSiteProfiles Ferredoxin-fold anticodon binding (FDX-ACB) domain profile. 334 424 IPR005121 -
Vvi19g1050 424 PANTHER PHENYLALANINE--TRNA LIGASE, MITOCHONDRIAL 45 418 IPR004530 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vvi19g1050 424 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 1 332 IPR006195 -
Vvi19g1050 424 SMART FDX_ACB_2 334 424 IPR005121 -
Vvi19g1050 424 PANTHER PHENYLALANYL-TRNA SYNTHETASE 45 418 - -
Vvi19g1050 424 SUPERFAMILY Anticodon-binding domain of PheRS 329 424 IPR036690 -
Vvi19g1050 424 Gene3D - 331 423 IPR036690 -
Vvi19g1050 424 Pfam tRNA synthetases class II core domain (F) 105 321 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1050 K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] - vvi:100265994 704.901
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003668 2 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 5 43