Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1050 ATGCTTACTTACTTCAGAGGGGCCACTGCTCGCCACCACCACTTCATGGCTGTGCCCATTTCACTTGCCCAAGTCACTCTCTTCTCCAAACCCTCCATTTTACTCCACAGAAATGCCATCATTGGCTTCTCCTTTTCCATTCCTTTCTCCTCTTCTTCTGCTCACAAGATTCAGACTCACAAGTGGAGGCAACCGGTGGTCTCGCTTCTGGAGCTTGGTGGAGTCAAGATTGGCAGAGATGATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTTTTGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCTGAAGAATGCAATATATGATTATTTCAATGCCAATTACTCTAACAAATTTGATAAGTTGGATGACCTTTGCCCAATAGTCTCCACAAAAGAGAATTTTGATGATGTCTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAATGATACATACTACATTGACTCTCAAACTGTCTTGAGGTGCCACACTAGGGCTCATCAAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTACCTGTTTTTCATCAGATGGAAGGTGTTCGTGTCTTCTTTCCAGGTGATTGGGAGACATCTGGAATGGATGCACTTGTTTGGTAATGTAGAAATGCACTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTGTCAGGAGAAATGGTTAGAAGTTTTAGGTTGTGGGGTGACAGAGCAAGAAATATTACAGAAAAGTGGTAAAACAGGTAATGTTGCTTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTGTTTGGGATACCTGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTGACCTCTCAATTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGGCATGAGTTTTTGGATTAATGAGTCGTTCACAGAAAACAATTTATGTGAGGTTGTAAGAGGAGTTGCTGGAGATTTTGTCCAGGAGGTGCAATTGATCGACAATTTCACCAACAACAAAGGAATGACCAGTCAATGTTATCGGATAGCATACCGGTCCATGGAGCGTTCACTTACAGATGAGGAGATAAATGAGTTGCAGTGGAATGTTAGGGAGCAAGTGCACAGCAAGTTGAAGGTTGTTCTTAGATGA 1275 42.9 MLTYFRGATARHHHFMAVPISLAQVTLFSKPSILLHRNAIIGFSFSIPFSSSSAHKIQTHKWRQPVVSLLELGGVKIGRDDVVRDDPTNNVPDAIFLKLGMQLHRRDQHPIGILKNAIYDYFNANYSNKFDKLDDLCPIVSTKENFDDVLVPPDHISRSYNDTYYIDSQTVLRCHTRAHQAELLRRGHTHFLVTGDVYHRDFIDSTHYLFFIRWKVFVSSFQVIGRHLEWMHLFGNVEMHWIDTYFPFTNPSFELEIYCQEKWLEVLGCGVTEQEILQKSGKTGNVAWAFGLGLERLAMVLFGIPDIRLFWSTDERLTSQFSKDQLGVKFKPFSKYPPCYKGMSFWINESFTENNLCEVVRGVAGDFVQEVQLIDNFTNNKGMTSQCYRIAYRSMERSLTDEEINELQWNVREQVHSKLKVVLR* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21087507 21109170 + Vvi19g1050 Vvi19g1050 782549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1050 424 SUPERFAMILY Class II aaRS and biotin synthetases 98 321 IPR045864 -
Vvi19g1050 424 Gene3D Bira Bifunctional Protein; Domain 2 223 330 IPR045864 -
Vvi19g1050 424 Gene3D Bira Bifunctional Protein; Domain 2 75 222 IPR045864 -
Vvi19g1050 424 Pfam Ferredoxin-fold anticodon binding domain 334 424 IPR005121 -
Vvi19g1050 424 ProSiteProfiles Ferredoxin-fold anticodon binding (FDX-ACB) domain profile. 334 424 IPR005121 -
Vvi19g1050 424 PANTHER PHENYLALANINE--TRNA LIGASE, MITOCHONDRIAL 45 418 IPR004530 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vvi19g1050 424 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 1 332 IPR006195 -
Vvi19g1050 424 SMART FDX_ACB_2 334 424 IPR005121 -
Vvi19g1050 424 PANTHER PHENYLALANYL-TRNA SYNTHETASE 45 418 - -
Vvi19g1050 424 SUPERFAMILY Anticodon-binding domain of PheRS 329 424 IPR036690 -
Vvi19g1050 424 Gene3D - 331 423 IPR036690 -
Vvi19g1050 424 Pfam tRNA synthetases class II core domain (F) 105 321 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1050 K01889 - vvi:100265994 704.901