Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1053 ATGTATCGAATCCTTTGCTTCCTCTTCTTTCTCTCATATTCTCCAGTTATTTGTTTCTCTTTGTCTAATTCTACAAAGCTGTGTCCTCATCACCAGAATGTTGCCTTGCTTCGACTTAAGCAATTATTTTCCATAGATGTCTCCGCTTCTTCTTCGGATGATTGCAATTTAGCTTCTTTTGCCAAGACAGACACTTGGAAGGAAGGCACTAATTGTTGCTCATGGGATGGTGTCACATGCAATAGGGTTACAGGCCTTATAATCGGGCTCGACCTTAGTTGCACTAAGTTTGGACAATTCCGGAGAATGACTCATCTCAACCTTTCTTTCTCTGGATTTTCAGGTGTAATTGCTCCAGAAATCTCCCACCTATCCAACTTGGTTTCACTTGATCTTTCCATCTATAGTGGATTAGGACTTGAAACAAGTAGCTTCATTGCACTTGCTCGAAACCTAACGAAGTTGCAGAAACTTCATCTACGAGGTATAAATGTCTCTTCCATTTTGCCTATCTCCCTACTGAATTTATCTTCTTTGAGATCTATGGATCTCTCTTCTTGTTCCATTCCCTCGGTTTTAGGGAACCTCACACAAATCACTCACTTGGACCTCTCAAGAAATCAATTTGATGGTGAAATTTCAAATGTTTTCAATAAGATTAGAAAGCTAATTGTATTAGATCTTTCCAGTAATAGTTTCAGAGGTCAGTTCATAGCATCACTTGACAATCTAACAGAACTTTCTTTCTTAGACCTTTCAAACAATAACCTAGAAGGTATCATTCCTTCTCATGTGAAGGAACTTTCAAGTCTATCGGACATCCATTTGTCCAATAACTTGTTGAATGGGACAATACCATCTTGGTTGTTTAGTCTACCATCATTGATAAGGTTAGATCTCAGTCATAACAAACTCAATGGTCATATTGATGAATTCCAATCCCCTTCATTGGAGTCCATTGATTTGAGTAGTAATGAGTTAGATGGGCCAGTTCCAAGTTCCATCTTTGAACTTGTAAATCTTACATATCTCCAACTTTCTTCAAATAACTTGGGACCACTTCCATCATTGATTTGTGAAATGAGTTATATTAGTGTTCTGGATTTCTCTAATAACAACTTGAGTGGATTAATTCCACAATGTTTGGGAAACTTCAGTGAGTCTCTCTCTGTTTTGGATTTGCGAATGAATCAGCTTCATGGTAACATTCCTGAAACGTTTTCGAAGGGCAATTTTATCAGGAATCTTGGCTTCAATGGAAATCAATTGGAAGGGCCTCTACCACGATCTTTGATCAATTGTAGAAGGTTGCAAGTTTTAGACCTTGGAAATAATAGAATAAATGATACATTCCCTTATTGGTTGGAAACTCTTCCAGAGCTACAAGTTTTGATCTTGCGTTCTAATAGGTTCCATGGTCACATAAGCGGTTCAAATTTCCAATTTCCATTTCCCAAGTTACGAATAATGGATCTTTCACGCAATGATTTCTCTGGTAGTTTACCGGAAATGTATTTGAAGAATTTCAAGGCAATGATGAATGTCACTGAGGATAAAATGAAACTGAAATATATGGGGGAATACTATTATCGAGATTCGATAATGGGAACAATCAAAGGATTTGATTTTGAATTTGTAATTTTGTCTACCTTCACAACAATTGATTTGTCCAGCAATAGATTCCAAGGAGAGATTCTAGATTTCATTGGAAGTCTTAGTTCACTTCGAGAACTCAACTTGTCTCATAACAATCTTACAGGGCATATTCCATCATCATTGGGGAATCTAATGGTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTTAGTGGGAGAATTCCAAGGGAGTTGACAAGTCTGACATTTCTTGAAGTCTTAAATCTTTCGAAAAATCATCTCACTGGAGTCATTCCTCGAGGCAACCAATTTGATACATTTGCAAATAATTCATATAGTGGGAATATAGGATTATGTGGACTTCCCTTGTCTAAGAAATGTGTAGTTGATGAAGCACCACAACCTCCCAAAGAAGAGGAGGTGGAATCCGATACTGGATTTGATTGGAAAGTCATATTGATGGGGTATGGTTGTGGACTAGTAGTTGGATTGTTTATGGGGTGCCTCGTCTTCTTAACAAGAAAACCTAAATGGTTTGTAACAATGATTGAAGGAGATAGACATAAGAAGGTTAGAAGGTCAACAAGGAGCACTCGCAGGCATGGAGCAAGAAGAAGTTAG 2238 37.76 MYRILCFLFFLSYSPVICFSLSNSTKLCPHHQNVALLRLKQLFSIDVSASSSDDCNLASFAKTDTWKEGTNCCSWDGVTCNRVTGLIIGLDLSCTKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRGINVSSILPISLLNLSSLRSMDLSSCSIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASLDNLTELSFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLSHNKLNGHIDEFQSPSLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGPLPSLICEMSYISVLDFSNNNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFVILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPPKEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGDRHKKVRRSTRSTRRHGARRS* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21188376 21191382 + Vvi19g1053 Vvi19g1053 782552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 197 286 IPR045273 -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 50 188 IPR045273 -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 271 351 IPR045273 -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 352 716 IPR045273 -
Vvi19g1053 745 PRINTS Leucine-rich repeat signature 247 260 - -
Vvi19g1053 745 PRINTS Leucine-rich repeat signature 572 585 - -
Vvi19g1053 745 ProSiteProfiles Leucine-rich repeat profile. 574 596 IPR001611 GO:0005515
Vvi19g1053 745 Gene3D Ribonuclease Inhibitor 30 313 IPR032675 -
Vvi19g1053 745 SUPERFAMILY L domain-like 66 310 - -
Vvi19g1053 745 SUPERFAMILY L domain-like 314 663 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 50 188 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 197 286 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 352 716 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 271 351 - -
Vvi19g1053 745 Gene3D Ribonuclease Inhibitor 314 673 IPR032675 -
Vvi19g1053 745 SMART LRR_typ_2 458 482 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 572 596 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 620 643 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 338 361 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 244 264 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 484 507 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 196 219 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 268 292 IPR003591 -
Vvi19g1053 745 Pfam Leucine rich repeat 552 609 IPR001611 GO:0005515
Vvi19g1053 745 Pfam Leucine rich repeat 435 497 IPR001611 GO:0005515
Vvi19g1053 745 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Vvi19g1053 745 Pfam Leucine rich repeat N-terminal domain 32 81 IPR013210 -
Vvi19g1053 745 ProSiteProfiles Leucine-rich repeat profile. 340 361 IPR001611 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1053 - K13470 vvi:100261089 835.484