Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1053 ATGTATCGAATCCTTTGCTTCCTCTTCTTTCTCTCATATTCTCCAGTTATTTGTTTCTCTTTGTCTAATTCTACAAAGCTGTGTCCTCATCACCAGAATGTTGCCTTGCTTCGACTTAAGCAATTATTTTCCATAGATGTCTCCGCTTCTTCTTCGGATGATTGCAATTTAGCTTCTTTTGCCAAGACAGACACTTGGAAGGAAGGCACTAATTGTTGCTCATGGGATGGTGTCACATGCAATAGGGTTACAGGCCTTATAATCGGGCTCGACCTTAGTTGCACTAAGTTTGGACAATTCCGGAGAATGACTCATCTCAACCTTTCTTTCTCTGGATTTTCAGGTGTAATTGCTCCAGAAATCTCCCACCTATCCAACTTGGTTTCACTTGATCTTTCCATCTATAGTGGATTAGGACTTGAAACAAGTAGCTTCATTGCACTTGCTCGAAACCTAACGAAGTTGCAGAAACTTCATCTACGAGGTATAAATGTCTCTTCCATTTTGCCTATCTCCCTACTGAATTTATCTTCTTTGAGATCTATGGATCTCTCTTCTTGTTCCATTCCCTCGGTTTTAGGGAACCTCACACAAATCACTCACTTGGACCTCTCAAGAAATCAATTTGATGGTGAAATTTCAAATGTTTTCAATAAGATTAGAAAGCTAATTGTATTAGATCTTTCCAGTAATAGTTTCAGAGGTCAGTTCATAGCATCACTTGACAATCTAACAGAACTTTCTTTCTTAGACCTTTCAAACAATAACCTAGAAGGTATCATTCCTTCTCATGTGAAGGAACTTTCAAGTCTATCGGACATCCATTTGTCCAATAACTTGTTGAATGGGACAATACCATCTTGGTTGTTTAGTCTACCATCATTGATAAGGTTAGATCTCAGTCATAACAAACTCAATGGTCATATTGATGAATTCCAATCCCCTTCATTGGAGTCCATTGATTTGAGTAGTAATGAGTTAGATGGGCCAGTTCCAAGTTCCATCTTTGAACTTGTAAATCTTACATATCTCCAACTTTCTTCAAATAACTTGGGACCACTTCCATCATTGATTTGTGAAATGAGTTATATTAGTGTTCTGGATTTCTCTAATAACAACTTGAGTGGATTAATTCCACAATGTTTGGGAAACTTCAGTGAGTCTCTCTCTGTTTTGGATTTGCGAATGAATCAGCTTCATGGTAACATTCCTGAAACGTTTTCGAAGGGCAATTTTATCAGGAATCTTGGCTTCAATGGAAATCAATTGGAAGGGCCTCTACCACGATCTTTGATCAATTGTAGAAGGTTGCAAGTTTTAGACCTTGGAAATAATAGAATAAATGATACATTCCCTTATTGGTTGGAAACTCTTCCAGAGCTACAAGTTTTGATCTTGCGTTCTAATAGGTTCCATGGTCACATAAGCGGTTCAAATTTCCAATTTCCATTTCCCAAGTTACGAATAATGGATCTTTCACGCAATGATTTCTCTGGTAGTTTACCGGAAATGTATTTGAAGAATTTCAAGGCAATGATGAATGTCACTGAGGATAAAATGAAACTGAAATATATGGGGGAATACTATTATCGAGATTCGATAATGGGAACAATCAAAGGATTTGATTTTGAATTTGTAATTTTGTCTACCTTCACAACAATTGATTTGTCCAGCAATAGATTCCAAGGAGAGATTCTAGATTTCATTGGAAGTCTTAGTTCACTTCGAGAACTCAACTTGTCTCATAACAATCTTACAGGGCATATTCCATCATCATTGGGGAATCTAATGGTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTTAGTGGGAGAATTCCAAGGGAGTTGACAAGTCTGACATTTCTTGAAGTCTTAAATCTTTCGAAAAATCATCTCACTGGAGTCATTCCTCGAGGCAACCAATTTGATACATTTGCAAATAATTCATATAGTGGGAATATAGGATTATGTGGACTTCCCTTGTCTAAGAAATGTGTAGTTGATGAAGCACCACAACCTCCCAAAGAAGAGGAGGTGGAATCCGATACTGGATTTGATTGGAAAGTCATATTGATGGGGTATGGTTGTGGACTAGTAGTTGGATTGTTTATGGGGTGCCTCGTCTTCTTAACAAGAAAACCTAAATGGTTTGTAACAATGATTGAAGGAGATAGACATAAGAAGGTTAGAAGGTCAACAAGGAGCACTCGCAGGCATGGAGCAAGAAGAAGTTAG 2238 37.76 MYRILCFLFFLSYSPVICFSLSNSTKLCPHHQNVALLRLKQLFSIDVSASSSDDCNLASFAKTDTWKEGTNCCSWDGVTCNRVTGLIIGLDLSCTKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRGINVSSILPISLLNLSSLRSMDLSSCSIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASLDNLTELSFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLSHNKLNGHIDEFQSPSLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGPLPSLICEMSYISVLDFSNNNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFVILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPPKEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGDRHKKVRRSTRSTRRHGARRS* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21188376 21191382 + Vvi19g1053 Vvi19g1053 782552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 197 286 IPR045273 -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 50 188 IPR045273 -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 271 351 IPR045273 -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 352 716 IPR045273 -
Vvi19g1053 745 PRINTS Leucine-rich repeat signature 247 260 - -
Vvi19g1053 745 PRINTS Leucine-rich repeat signature 572 585 - -
Vvi19g1053 745 ProSiteProfiles Leucine-rich repeat profile. 574 596 IPR001611 GO:0005515
Vvi19g1053 745 Gene3D Ribonuclease Inhibitor 30 313 IPR032675 -
Vvi19g1053 745 SUPERFAMILY L domain-like 66 310 - -
Vvi19g1053 745 SUPERFAMILY L domain-like 314 663 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 50 188 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 197 286 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 352 716 - -
Vvi19g1053 745 PANTHER RECEPTOR-LIKE PROTEIN 271 351 - -
Vvi19g1053 745 Gene3D Ribonuclease Inhibitor 314 673 IPR032675 -
Vvi19g1053 745 SMART LRR_typ_2 458 482 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 572 596 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 620 643 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 338 361 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 244 264 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 484 507 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 196 219 IPR003591 -
Vvi19g1053 745 SMART LRR_typ_2 268 292 IPR003591 -
Vvi19g1053 745 Pfam Leucine rich repeat 552 609 IPR001611 GO:0005515
Vvi19g1053 745 Pfam Leucine rich repeat 435 497 IPR001611 GO:0005515
Vvi19g1053 745 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Vvi19g1053 745 Pfam Leucine rich repeat N-terminal domain 32 81 IPR013210 -
Vvi19g1053 745 ProSiteProfiles Leucine-rich repeat profile. 340 361 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1053 - - K13470 vvi:100261089 835.484
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .