Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1055 ATGGCAAGAACCGACAAAAATATTGAAGTTGTAATTCTCTCAAGGTGTGTAGCCTTACTTAAAGCTTGCGGAAATGCTTGTGCATCGCCTATGGCAAGTACAGTTATGATTCCAGAAGGGACATATGCACTAGGCCAAATAACCATTGGAGGCCCTTGCAAGGCTCCTATCAATTTCATTGTCCAAGGCACTATGAAGGCCCCGGTGGATACCAGCAGGTTCAAGGCTGAAGCTGGTTGGATTGCTTTCCAACAAATCGACCAATTCACGTTGTTTGGTGGTGGAGTTTTTTATGGCCAAGGAAAAACTGTATGGGGCAGAAAAAGCCCCCGTTCTGCATATTGCAACCAACTTCCCATTAATCTGAGGTTCAACTTCATCACCAATAGCATGGTCAACGACATAACTTCAAGAGACAGCAAACAGTTTCATATTAATCTTTTAGGGTGCAAGAATTTGACTTTCTACAACATTGCAATTAGTGCACCAGAAGAGAGCCTTAACACAGATCGATGGAAATCACATTGGACGTTCCTCAGGGATCAATATCACCGATTCAACCATAGAAACCGGAGATGA 579 43.18 MARTDKNIEVVILSRCVALLKACGNACASPMASTVMIPEGTYALGQITIGGPCKAPINFIVQGTMKAPVDTSRFKAEAGWIAFQQIDQFTLFGGGVFYGQGKTVWGRKSPRSAYCNQLPINLRFNFITNSMVNDITSRDSKQFHINLLGCKNLTFYNIAISAPEESLNTDRWKSHWTFLRDQYHRFNHRNRR* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21265507 21281525 + Vvi19g1055 Vvi19g1055 782554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1055 192 Pfam Glycosyl hydrolases family 28 27 170 IPR000743 GO:0004650|GO:0005975
Vvi19g1055 192 SUPERFAMILY Pectin lyase-like 18 170 IPR011050 -
Vvi19g1055 192 PANTHER - 16 170 - -
Vvi19g1055 192 Gene3D - 16 174 IPR012334 -
Vvi19g1055 192 PANTHER POLYGALACTURONASE 16 170 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1055 K01213 - vvi:100264944 279.641