Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1056 ATGGGAAGTCTTGGAAAGTACTCCAATGAAGAACCTGTGGTTGGCATTAGTGTCAAGAACTGTACCTTCACCAACACCCAGAATGGCGTGAGAGTGAAGACATGGCCTGCTTCCCATCAAGGCACTGCCTTTGAAATGCATTTTGAAGATATTGCTATGAATAATGTTGGCAATCCCATAATCATAGATCAAGAGTACTGCCCCCATAACCAATGCAACTTGAAGATTCCATCACGCATTAAGCTCAACAATGTTAGCTTCAGAAACATCTGA 273 42.49 MGSLGKYSNEEPVVGISVKNCTFTNTQNGVRVKTWPASHQGTAFEMHFEDIAMNNVGNPIIIDQEYCPHNQCNLKIPSRIKLNNVSFRNI* 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21281601 21282410 + Vvi19g1056 Vvi19g1056 782555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1056 90 PANTHER - 2 90 - -
Vvi19g1056 90 PANTHER OS06G0509600 PROTEIN 2 90 - -
Vvi19g1056 90 SUPERFAMILY Pectin lyase-like 1 90 IPR011050 -
Vvi19g1056 90 Gene3D - 1 90 IPR012334 -
Vvi19g1056 90 Pfam Glycosyl hydrolases family 28 1 90 IPR000743 GO:0004650|GO:0005975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1056 K01213 - vvi:100247162 177.178