Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1057 ATGGGAGTTCAGGGTGTGGAGAGTATGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTAGAAAATGGTATGAAGTGAAAAAATTGTTGATGGTTGGTGCTAAAGGTAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGATTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTTATCAAGTCTTTAGCAATGATATTGCAGTCTAAAAGAGAACTGGGGCAGTGGTTGTCTATTAGAAACAATAAAAATTTGCTGTCACTTGGAGATGAAAATGAGAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGTCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAATTAGAGGATATAGGGGATCAATATTTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGGAAGCAATCATCTTACTAATACATTAAGGTATAAAATGCATGACCTTATACATGATCTTGCACAATCAATTATAGGATCTGAGGTCCTCATTTTAAGAAATGATGTAAAAAACATTTCAAAAGAAGTTCGTCATGTATCATCGTTTGAAAAGGTGAATCCTATAATAGAGGCTCTAAAGGAAAAACCTATAAGGACCTTTTTATACCAATATAGATATAATTTTGAATATGATAGTAAAGTTGTGAATTCATTTATTTCAAGTTTTATGTGTTTACGTGTGTTGAGCTTAAATGGCTTCCTATCAAAGAAGGTGCCAAACTGTTTAGGTAAATTGAGTCATTTAAGGTATCTTGATCTTTCCTACAATACTTTTGAGGTACTTCCGAATGCTATTACAAGGTTAAAGAATTTGCAAACACTGAAACTCAAAGTGTGTCCGAATTTGAAAAAACTTCCAAAAAATATAAGGCAACTTATCAATCTTAGACACTTGGAGAATGAGAGATGGAGCGACTTGACTCATATGCCACGTGGAATAGGAAAGTTGACTTTACTTCAAAGTCTACCATTGTTTGTTGTTGGGAATGAGACAGGGAGGTTAAGGAATCACAAAATTGGTAGCTTGATTGAGTTGGAAAGCCTGAACCATCTAAGAGGAGGGTTATGCATAAGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGAGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAATCGGTCGGGCCAAGATGGGGGGGATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCCACAATTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATAGGTTGGGTTCCCTGCTTCCCGACTTAATTAAAATTGAAATTTCGGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTGGATGATATGAAAGAAGTGGTGGAGATAAAGGAGGGTTCATTGGCAACGCCACTTTTCCCATCTCTTGAATCGCTCGAACTCTCTCACATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAAGTCAGAGCAGAGGTACTGAGGCAGTTAATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTTTGCATATACGGAAGATTGATGGTATGATATCTATCCCAGAGGAGCCGCTTCAATGTGTTTCCACTCTCGAAACTCTCTACATTGTTGAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGAAACTTATTATTTATTACTGCTCTGAATTGACATCACTGCCAGAAGAGATCTATTCCCTTAAAAAACTGCAGACATTTTATTTCTGTGATTATCCACACCTAGAGGAAAGATACAAGAAGGAAACAGGCGAAGACCGGGCCAAGATTGCTCATATCCCACATGTTCGTTTCAACAGTGATTCCTATATGGAATTGGAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTAATTTAGAATCAGAATGCTATATTTTCATTTTGTCTCTGGTAGTTCTTTTATGTTGGCACCTCATGTGTTTGTTTAAATGCTCACATCAATAA 2385 37.27 MGVQGVESMTLDGLKDKLHEKISQKKYLLVLDDVWNENPRKWYEVKKLLMVGAKGSKIIVTTRKLNVASIMEDKSPVSLKGLGEKESWDLFSKFAFREQEILKPEIVEIGEEIAKMCKGVPLVIKSLAMILQSKRELGQWLSIRNNKNLLSLGDENENVLGVLKLSYDNLSTHLRQCFTYCALFPKDYEIEKKLVVQLWIAQGYIQSSNDNNEQLEDIGDQYFEELLSRSLLEKAGSNHLTNTLRYKMHDLIHDLAQSIIGSEVLILRNDVKNISKEVRHVSSFEKVNPIIEALKEKPIRTFLYQYRYNFEYDSKVVNSFISSFMCLRVLSLNGFLSKKVPNCLGKLSHLRYLDLSYNTFEVLPNAITRLKNLQTLKLKVCPNLKKLPKNIRQLINLRHLENERWSDLTHMPRGIGKLTLLQSLPLFVVGNETGRLRNHKIGSLIELESLNHLRGGLCISNLQNVRDVELVSRGEILKGKQYLQSLRLEWNRSGQDGGDEGDKSVMEGLQPHPQLKDIFIEGYGGTEFPSWMMNDRLGSLLPDLIKIEISGCSRCKILPPFSQLPSLKSLKLDDMKEVVEIKEGSLATPLFPSLESLELSHMPKLKELWRMDLLAEEVRAEVLRQLMFVSASSSLKSLHIRKIDGMISIPEEPLQCVSTLETLYIVECSGLATLLHWMGSLSSLTKLIIYYCSELTSLPEEIYSLKKLQTFYFCDYPHLEERYKKETGEDRAKIAHIPHVRFNSDSYMELEVGPKSLTFLPIFINLESECYIFILSLVVLLCWHLMCLFKCSHQ* 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21321944 21330018 + Vvi19g1057 Vvi19g1057 782556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1057 794 Gene3D - 2 77 IPR027417 -
Vvi19g1057 794 SUPERFAMILY L domain-like 237 721 - -
Vvi19g1057 794 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 12 702 - -
Vvi19g1057 794 Gene3D Ribonuclease Inhibitor 300 616 IPR032675 -
Vvi19g1057 794 Gene3D Ribonuclease Inhibitor 623 731 IPR032675 -
Vvi19g1057 794 PANTHER DISEASE RESISTANCE PROTEIN RP 12 702 IPR044974 GO:0006952
Vvi19g1057 794 Pfam NB-ARC domain 13 169 IPR002182 GO:0043531
Vvi19g1057 794 Gene3D - 167 258 IPR036388 -
Vvi19g1057 794 PRINTS Disease resistance protein signature 21 35 - -
Vvi19g1057 794 PRINTS Disease resistance protein signature 117 131 - -
Vvi19g1057 794 PRINTS Disease resistance protein signature 368 384 - -
Vvi19g1057 794 Gene3D - 81 166 IPR042197 -
Vvi19g1057 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 181 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1057 - - vvi:100244403 1305.04