Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1058 ATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAAGTTGGGGTCCAAGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGCTAACCAAGCTCAAGGACAACCTCGACGTCATCAAAGGTGTACTTCTGGATGCTGAGGAACAGCAGCAGCAGAAAACTCGTGGAATAGAAGCTTGGGTCCAGATGCTCAAAGGCGCCGTGTATGACGCAGATGACTTGCTGGATGACTATGCAACCCATTATCTACAGCGAGGAGGATTCGCAAGGCAGGTCAGTGACTTCTTCTCATCTGAAAATCAAGTTGCTTTTCGCTTTAAGATGAGTCATAGACTCAACGATATCAATGAAAGGCTAGACGCTATCGAAAAAAAAATCCCCATGTTGAATCTGACTCGACGGGAGGCAATACGCATAGGAGTAGAGAATAGTTGGAGAGAAACCCACTCATTCTCGTTGCCATCTGAAATTGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAATTGGTATACAATGACGAAAGAGTAGAACATTTTGAGCGTAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGGTGTGGAGAGTCTGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTGGAAAATGGTATGAAGTGAAAAAATTGTTGATGGTTGGTGCTAGAGGTAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTGTGGAAGATAAGTCTCCCCTTAGTTTGAAAGGTCTAGGAAAAAAGGAGTCTCGGGCTTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCATTATTAAGACTTTAGCAATGATATTGCATTCTAAAAGAGAACTGGGATTTTGGTTGTCTATTAGAAACAATATTAAAAATTTGCTATTACTTGGAGTTGAGAACGATAATGTTGTACGGGTCTTGAAACTAAGTTATGATAATTTGCCAACACATTTGAAACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAAATTGAGAAAAGGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAATTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGCTTGAGTGAATTGAAAGGCCTTAACCAACTAAGAGGAGGGTTATGCGTAAGTGATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGGATCGGTGGGGCCGAGATGGGGGGGATGAGAGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCAACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGGGTTGGGTTCCCTGTTTCCCGACCTAATTAAAATTGAAATTTCGGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTTCATAATATGAAAGAAGTGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCGAACTCTCTGACATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAAAAACCTCCTTCATTTTCTCATCTTTCGAAGTTATATATTTATGCATGCTCTGGTTTGGCATCACTGCATCCTTCTCCTTCTCTTTCTCAATTAAAGATCCATAATTGCCCAAACTTGACATCCATGGAACTGCCGTCATCTCTTTGTCTTTCTCAATTAGATATCAGAAAATGCCCTAACTTGGCATCCTTCAAAGTGGCTCCATTACCTTCTCTTGGGATACTCTCTCTGTTCACAGTTAGATATGGTGTGGTACGGCAGATAATGTCTGTCTCTGCTTCTTCTTCGTTGCGGTGTCTGTATATTAAAAGCATAGATGATATGATATCTCTCCCGAAGGAGTTACTTCAACATGTTTCTGGCTTGGTAACGTTAGAGATCCGTGAGTGTCCTAACTTGCAATCCTTGGAACTGCCCTCATCCCATTGTCTTTCTAAATTAAAGATTGGAGAATGCCCTAACTTGGCATCCTTCAATGTGGCTTCATTACCTCGTCTTGAGGAACTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTCATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTACATATACGGAAGATTGATGGTATGATATCTCTCCCAGAGGAGCCGCTTCAATATGTTTCCACTCTCGAAACTCTCCACATTGTTAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGGAACTTATTATTTATGACTGCTCTGAATTGACATCACTGCCAGAAGAGGTCTATTCCCTTAAAAAACTGCAGACATTTTATTTCTGTGATTATCCACACCTAGAGGAAAGATACAACAAGGAAACAGGTAAAGACCGGGCCAAGATTGCTCGTATCCCACATGTTCGTTTCAACAGTGATACCTATATGGTAATGAAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTATTTAA 2901 40.64 MADQIPFGVVEHILTKLGSKAFQEIGSMYGVPKELTKLKDNLDVIKGVLLDAEEQQQQKTRGIEAWVQMLKGAVYDADDLLDDYATHYLQRGGFARQVSDFFSSENQVAFRFKMSHRLNDINERLDAIEKKIPMLNLTRREAIRIGVENSWRETHSFSLPSEIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQLVYNDERVEHFERKTWVCISDDSGDGLDVKLWVKKILKSMGVQGVESLTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYEVKKLLMVGARGSKIIVTTRKLNVASIVEDKSPLSLKGLGKKESRALFSKFAFREQEILKPEIVEIGEEIAKMCKGVPLIIKTLAMILHSKRELGFWLSIRNNIKNLLLLGVENDNVVRVLKLSYDNLPTHLKQCFTYCALFPKDYEIEKRLVVQLWIAQGYIQSSNDNNEQLEDIGDQYVEELLSSLSELKGLNQLRGGLCVSDLQNVRDVELVSRGEILKGKQYLQSLRLEWDRWGRDGGDESDKSVMEGLQPHQHLKDIFIEGYGGTEFPSWMMNDGLGSLFPDLIKIEISGCSRCKILPPFSQLPSLKSLKLHNMKEVVELKEGSLTTPLFPSLESLELSDMPKLKELWRMDLLAEKPPSFSHLSKLYIYACSGLASLHPSPSLSQLKIHNCPNLTSMELPSSLCLSQLDIRKCPNLASFKVAPLPSLGILSLFTVRYGVVRQIMSVSASSSLRCLYIKSIDDMISLPKELLQHVSGLVTLEIRECPNLQSLELPSSHCLSKLKIGECPNLASFNVASLPRLEELSLRGVRAEVLRQFMFVSASSSLKSLHIRKIDGMISLPEEPLQYVSTLETLHIVKCSGLATLLHWMGSLSSLTELIIYDCSELTSLPEEVYSLKKLQTFYFCDYPHLEERYNKETGKDRAKIARIPHVRFNSDTYMVMKVGPKSLTFLPIFII* 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21375904 21379426 + Vvi19g1058 Vvi19g1058 782557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1058 966 Gene3D - 410 480 IPR036388 -
Vvi19g1058 966 PANTHER DISEASE RESISTANCE PROTEIN RP 473 699 IPR044974 GO:0006952
Vvi19g1058 966 PANTHER DISEASE RESISTANCE PROTEIN RP 46 471 IPR044974 GO:0006952
Vvi19g1058 966 Gene3D Ribonuclease Inhibitor 794 942 IPR032675 -
Vvi19g1058 966 Gene3D - 148 318 IPR027417 -
Vvi19g1058 966 Gene3D - 9 119 - -
Vvi19g1058 966 Gene3D Ribonuclease Inhibitor 510 793 IPR032675 -
Vvi19g1058 966 Pfam Rx N-terminal domain 9 100 IPR041118 -
Vvi19g1058 966 Coils Coil 35 55 - -
Vvi19g1058 966 Pfam NB-ARC domain 166 412 IPR002182 GO:0043531
Vvi19g1058 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 424 IPR027417 -
Vvi19g1058 966 SUPERFAMILY RNI-like 572 920 - -
Vvi19g1058 966 Gene3D - 323 409 IPR042197 -
Vvi19g1058 966 PRINTS Disease resistance protein signature 187 202 - -
Vvi19g1058 966 PRINTS Disease resistance protein signature 263 277 - -
Vvi19g1058 966 PRINTS Disease resistance protein signature 359 373 - -
Vvi19g1058 966 PRINTS Disease resistance protein signature 762 778 - -
Vvi19g1058 966 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 46 471 - -
Vvi19g1058 966 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 473 699 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1058 - - vvi:104877751 954.896