Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g106 ATGCTACCGGAGCTGCTCGGGGAGATCATTCAGCGAGTGGAAGCAAGCGAGAACCGGTGGCCGACTCGCAGAAACGTCGTGTCGTGCGCCTGTGTGTGCAAGAGGTGGAGAGATATTACCAGAGAGGTCGTGAGGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGGTGCTCACACCGAGTACATAATATCACTTGATGCTGATGACATATCTCAAGGAAGTAATGCTTATGTTGGAAAGTTAAGGTCGGATTTCCTTGGAACCAACTTCGCAATTTATGACAGCCAGCCCCCACACAGCGGTGCAAAGCCCTCAAGCAGCAGAGCTGGCCGACGTTTCGCGAGCAAGCAAATAAGCCCCCAAGTTCCAGCAGGCAACTTCGAGGTTGGACAGGTCTCTTACAAGTTCAACCTCTTGAAATCAAGAGGACCAAGGAGGATGGTCTGCTCACTCCGCTGTCCATCCTCAGGAGAAACTGCCAACAACAAATCTCCAGACAACTCTGACTTGAAAAAACCCGACCCTGCTGCTCCTGGGTGCTCAATCTTGAAGAATAAAGCACCAAGGTGGCATGAACATCTGCAATGTTGGTGCTTGAATTTCCATGGTCGGGTGACTGTAGCTTCTGTGAAGAACTTCCAACTAGTTGCAACAGTTGACCAAAGCCAGCCAGGCGGTAAAGGAGATGAAGAAACTGTCCTCCTCCAGTTTGGTAAGGTCGGCAACGACACTTTCACCATGGACTATCGGCAACCCTTATCAGCCTTCCTCGCATTTGCCATTTGCCTTACTAGCTTTGGTACGAAACTGGCCTGTGAGTGA 978 49.28 MLPELLGEIIQRVEASENRWPTRRNVVSCACVCKRWRDITREVVRSRLDSGQITFPSCLKQPGPRNSEHQCLIKRNKKNSTFYLYLALSSSFTDKGKFLLAARRYRHGAHTEYIISLDADDISQGSNAYVGKLRSDFLGTNFAIYDSQPPHSGAKPSSSRAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLRCPSSGETANNKSPDNSDLKKPDPAAPGCSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGNDTFTMDYRQPLSAFLAFAICLTSFGTKLACE* 326
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 1360588 1367394 + Vvi19g106 Vvi19g106 781605
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g106 325 ProSitePatterns Tub family signature 1. 253 266 IPR018066 -
Vvi19g106 325 Pfam F-box domain 3 44 IPR001810 GO:0005515
Vvi19g106 325 ProSitePatterns Tub family signature 2. 310 325 IPR018066 -
Vvi19g106 325 PRINTS Tubby superfamily signature 113 129 IPR000007 -
Vvi19g106 325 PRINTS Tubby superfamily signature 129 153 IPR000007 -
Vvi19g106 325 PRINTS Tubby superfamily signature 178 205 IPR000007 -
Vvi19g106 325 PRINTS Tubby superfamily signature 235 252 IPR000007 -
Vvi19g106 325 PRINTS Tubby superfamily signature 253 269 IPR000007 -
Vvi19g106 325 PRINTS Tubby superfamily signature 282 301 IPR000007 -
Vvi19g106 325 PRINTS Tubby superfamily signature 303 325 IPR000007 -
Vvi19g106 325 Gene3D Tubby Protein; Chain A 54 325 IPR025659 -
Vvi19g106 325 MobiDBLite consensus disorder prediction 203 226 - -
Vvi19g106 325 SUPERFAMILY Tubby C-terminal domain-like 51 325 IPR025659 -
Vvi19g106 325 MobiDBLite consensus disorder prediction 148 167 - -
Vvi19g106 325 Pfam Tub family 59 320 IPR000007 -
Vvi19g106 325 PANTHER TUBBY-RELATED 1 325 - -
Vvi19g106 325 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 325 - -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14392 PF01167 Tub 1.60E-99 CL0395 Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g106 K19600 - vvi:100854941 669.848