Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g106 | ATGCTACCGGAGCTGCTCGGGGAGATCATTCAGCGAGTGGAAGCAAGCGAGAACCGGTGGCCGACTCGCAGAAACGTCGTGTCGTGCGCCTGTGTGTGCAAGAGGTGGAGAGATATTACCAGAGAGGTCGTGAGGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGGTGCTCACACCGAGTACATAATATCACTTGATGCTGATGACATATCTCAAGGAAGTAATGCTTATGTTGGAAAGTTAAGGTCGGATTTCCTTGGAACCAACTTCGCAATTTATGACAGCCAGCCCCCACACAGCGGTGCAAAGCCCTCAAGCAGCAGAGCTGGCCGACGTTTCGCGAGCAAGCAAATAAGCCCCCAAGTTCCAGCAGGCAACTTCGAGGTTGGACAGGTCTCTTACAAGTTCAACCTCTTGAAATCAAGAGGACCAAGGAGGATGGTCTGCTCACTCCGCTGTCCATCCTCAGGAGAAACTGCCAACAACAAATCTCCAGACAACTCTGACTTGAAAAAACCCGACCCTGCTGCTCCTGGGTGCTCAATCTTGAAGAATAAAGCACCAAGGTGGCATGAACATCTGCAATGTTGGTGCTTGAATTTCCATGGTCGGGTGACTGTAGCTTCTGTGAAGAACTTCCAACTAGTTGCAACAGTTGACCAAAGCCAGCCAGGCGGTAAAGGAGATGAAGAAACTGTCCTCCTCCAGTTTGGTAAGGTCGGCAACGACACTTTCACCATGGACTATCGGCAACCCTTATCAGCCTTCCTCGCATTTGCCATTTGCCTTACTAGCTTTGGTACGAAACTGGCCTGTGAGTGA | 978 | 49.28 | MLPELLGEIIQRVEASENRWPTRRNVVSCACVCKRWRDITREVVRSRLDSGQITFPSCLKQPGPRNSEHQCLIKRNKKNSTFYLYLALSSSFTDKGKFLLAARRYRHGAHTEYIISLDADDISQGSNAYVGKLRSDFLGTNFAIYDSQPPHSGAKPSSSRAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLRCPSSGETANNKSPDNSDLKKPDPAAPGCSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGNDTFTMDYRQPLSAFLAFAICLTSFGTKLACE* | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1360588 | 1367394 | + | Vvi19g106 | Vvi19g106 | 781605 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g106 | 325 | ProSitePatterns | Tub family signature 1. | 253 | 266 | IPR018066 | - | |
Vvi19g106 | 325 | Pfam | F-box domain | 3 | 44 | IPR001810 | GO:0005515 | |
Vvi19g106 | 325 | ProSitePatterns | Tub family signature 2. | 310 | 325 | IPR018066 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 113 | 129 | IPR000007 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 129 | 153 | IPR000007 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 178 | 205 | IPR000007 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 235 | 252 | IPR000007 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 253 | 269 | IPR000007 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 282 | 301 | IPR000007 | - | |
Vvi19g106 | 325 | PRINTS | Tubby superfamily signature | 303 | 325 | IPR000007 | - | |
Vvi19g106 | 325 | Gene3D | Tubby Protein; Chain A | 54 | 325 | IPR025659 | - | |
Vvi19g106 | 325 | MobiDBLite | consensus disorder prediction | 203 | 226 | - | - | |
Vvi19g106 | 325 | SUPERFAMILY | Tubby C-terminal domain-like | 51 | 325 | IPR025659 | - | |
Vvi19g106 | 325 | MobiDBLite | consensus disorder prediction | 148 | 167 | - | - | |
Vvi19g106 | 325 | Pfam | Tub family | 59 | 320 | IPR000007 | - | |
Vvi19g106 | 325 | PANTHER | TUBBY-RELATED | 1 | 325 | - | - | |
Vvi19g106 | 325 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 7 | 1 | 325 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14392 | PF01167 | Tub | 1.60E-99 | CL0395 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g106 | K19600 | - | vvi:100854941 | 669.848 |