Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1063 ATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAACTTGGGGTCCTCGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGATGACCAAGCTCAAGGGGAAACTGGGCATCATCAAGGCTGTGCTTTTGGATGCTGAGGAGAAGCAGCAGCAGAGCAATCATGCAGTCAAAGATTGGGTCAAAGATTGGGTCCGGAGTCTCAAAGGCGTTGTGTATGACGCAGATGACTTGCTGGATGACTATGCAACCCATTATCTTCAGCGAGGAGGATTGGCAAGGCAGGTCAGTGATTTCTTCTCATCTGAAAATCAAGTTGCTTTTCGTTTAAACATGAGTCATAGACTCAAGGATATCAAAGAAAGGATAGATGACATTGAAAAAGGCATCCCCATGTTAAATCTGACTCCACGGGACATAGTACATAGGAGAGACAGCCATTCATTCGTGTTGCCGTCTGAAATGGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAGGGAAGTTGTTGTCGTCCAAGGGTGAAGAAAAGCTTTCGGTTGTTGCCATTGTAGGCATTGGGGGGTTGGGAAAGACCACCCTTGCTAAATTGGTATACAATGATGAAAGAGTGGTCAATCATTTTGAGTTTAAGATATGGGCTTGCATTTCTGATGATTCTGGTGATAGTTTTGATGTTATTATGTGGATCAAAAAAATTTTAAAATCTCTGAATGTTGGGGATGCTGAAAGTCTGGAGACTATGAAAACTAAGCTTCATGAAAAAATAAGTCAAAAGAGGTACTTGCTAGTCCTCGATGATGTTTGGAATCAAAATCCTCAAAAATGGGATGACGTGAGAACTTTATTAATGGTTGGGGCTATTGGTAGTAAAATTGTAGTGACCACCCGTAAACCAAGAGTTGCATCAATCATGGGAGATAATTCTCCCATTAGTTTGGAAGAATTTGCATCCAGAAATTCTAGAAATTGGAGAAGAAATTGCAAAAATAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGCCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTTTGAGATTGAGAAAAAGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAACCTTATAATAATAAGCAATTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGGTCATTGAATCACAAAATTGGTGGCTTGAGTGAATTGAAAGGCCTTAACCAACTAAGAGGAGGGTTATGCATACGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGGAATTTTGAAAGGAAAACAATGTCTTCAGTCCTTGAGATTGAAATGGATACGGTCGGGCCAAGATGGGGGGGATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCGACACCTAAAGGATATCTTTATACAAGGTTACGAAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGAGTTGGGTTCCCTGTTTCCCTACCTAATTAAAATTGAAATTTCAGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTTAAGTTTATGGAAGAACTGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCGAACTCCATGTCATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAAGATGATATGATATCTCTCCCGAAGGAGCTACTTCAACATGTTTCTGGCTTGGTAACGTTACGGATCCGTGAGTGTCCTAACTTGCAATCCTTGGAACTGCCGTCATCTCCTTCTCTTTCTGAATTAAGGATCATAAATTGCCCTAACTTGGCATCCTTCAATGTGGCATCATTACCTCGTCTTGAGGAACTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTCATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTGTGTATACGGGAGATTGATGGTATGATATCTCTCCGAGAGGAGCCGCTTCAATATGTTTCCACTCTCGAAACTCTCCACATTGTTAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGGAACTTATTATTTTTGGCTGCTCGGAATTGAAATCACTGCCAGAAGAGATCTATTCCCTTAAAAAACTGCAGACATTTTATTTCTGTGATTATCCAGACCTAGAGGAAAGATACAAGGAAACAGGTGAAGACCGGGCCAAGATTGCTCATATCCCACATGTTAGTTTCTACAGTGATTCGATTATGTATAGTAAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTATTTAA 2412 41.17 MADQIPFGVVEHILTNLGSSAFQEIGSMYGVPKEMTKLKGKLGIIKAVLLDAEEKQQQSNHAVKDWVKDWVRSLKGVVYDADDLLDDYATHYLQRGGLARQVSDFFSSENQVAFRLNMSHRLKDIKERIDDIEKGIPMLNLTPRDIVHRRDSHSFVLPSEMVGREENKEEIIGKLLSSKGEEKLSVVAIVGIGGLGKTTLAKLVYNDERVVNHFEFKIWACISDDSGDSFDVIMWIKKILKSLNVGDAESLETMKTKLHEKISQKRYLLVLDDVWNQNPQKWDDVRTLLMVGAIGSKIVVTTRKPRVASIMGDNSPISLEEFASRNSRNWRRNCKNNVLGVLKLSYDNLPTHLRQCFTYCALFPKDFEIEKKLVVQLWIAQGYIQPYNNKQLEDIGDQYVEELLSRSLNHKIGGLSELKGLNQLRGGLCIRNLQNVRDVELVSRGGILKGKQCLQSLRLKWIRSGQDGGDEGDKSVMEGLQPHRHLKDIFIQGYEGTEFPSWMMNDELGSLFPYLIKIEISGCSRCKILPPFSQLPSLKSLKLKFMEELVELKEGSLTTPLFPSLESLELHVMPKLKELWRMDLLAEEDDMISLPKELLQHVSGLVTLRIRECPNLQSLELPSSPSLSELRIINCPNLASFNVASLPRLEELSLRGVRAEVLRQFMFVSASSSLKSLCIREIDGMISLREEPLQYVSTLETLHIVKCSGLATLLHWMGSLSSLTELIIFGCSELKSLPEEIYSLKKLQTFYFCDYPDLEERYKETGEDRAKIAHIPHVSFYSDSIMYSKVGPKSLTFLPIFII* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21494507 21498389 + Vvi19g1063 Vvi19g1063 782562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1063 803 Pfam Rx N-terminal domain 9 103 IPR041118 -
Vvi19g1063 803 Gene3D - 9 127 - -
Vvi19g1063 803 SUPERFAMILY L domain-like 483 765 - -
Vvi19g1063 803 PRINTS Disease resistance protein signature 186 201 - -
Vvi19g1063 803 PRINTS Disease resistance protein signature 261 275 - -
Vvi19g1063 803 PRINTS Disease resistance protein signature 533 549 - -
Vvi19g1063 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 360 IPR027417 -
Vvi19g1063 803 Gene3D Ribonuclease Inhibitor 620 767 IPR032675 -
Vvi19g1063 803 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 411 646 - -
Vvi19g1063 803 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 55 408 - -
Vvi19g1063 803 PANTHER DISEASE RESISTANCE PROTEIN RP 55 408 IPR044974 GO:0006952
Vvi19g1063 803 PANTHER DISEASE RESISTANCE PROTEIN RP 411 646 IPR044974 GO:0006952
Vvi19g1063 803 Pfam NB-ARC domain 164 320 IPR002182 GO:0043531
Vvi19g1063 803 Gene3D - 150 316 IPR027417 -
Vvi19g1063 803 Gene3D Ribonuclease Inhibitor 394 592 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1063 - - vvi:100259870 625.165